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Advancing Scientific Knowledge in Plant Biology

Publications

    • Blocking the Q -binding site of photosystem II by tenuazonic acid, a non-host-specific toxin of Alternaria alternata, activates singlet oxygen-mediated and EXECUTER-dependent signalling in Arabidopsis 2015

      Chen, S., Kim, C., Lee, J.M., Lee, H.A., Fei, Z., Wang, L., and Apel, K.
      Plant Cell Environ
    • Singlet oxygen-mediated signaling in plants: moving from flu to wild type reveals an increasing complexity 2013

      Kim, C. and Apel, K.
      Photosynthesis Research 116,  455-464
      Full text...
    • O-1(2)-Mediated and EXECUTER-Dependent Retrograde Plastid-to-Nucleus Signaling in Norflurazon-Treated Seedlings of Arabidopsis thaliana 2013

      Kim, C.H. and Apel, K.
      Molecular Plant 6,  1580-1591
      Full text...
    • The SCO2 protein disulphide isomerase is required for thylakoid biogenesis and interacts with LHCB1 chlorophyll a/b binding proteins which affects chlorophyll biosynthesis in Arabidopsis seedlings 2012

      Tanz, S.K., Kilian, J., Johnsson, C., Apel, K., Small, I., Harter, K., Wanke, D., Pogson, B., and Albrecht, V.
      Plant J. 69,  743-75
      Full text...
    • The chloroplast division mutant caa33 of Arabidopsis thaliana reveals the crucial impact of chloroplast homeostasis on stress acclimation and retrograde plastid-to-nucleus signaling 2012

      Simkova, K., Kim, C., Gacek, K., Baruah, A., Laloi, C. and Apel, K.
      Plant J. 69,  701-712
      Full text...
    • Arabidopsis light-dependent protochlorophyllide oxidoreductase A (PORA) is essential for normal plant growth and development 2012

      Paddock, T., Lima, D., Mason, M.E., Apel, K. and Armstrong, G.A.
      Plant Mol. Biol. 78,  447-460
      Full text...
    • Chloroplasts of Arabidopsis are the source and a primary target of a plant-specific programmed cell death signaling pathway 2012

      Kim, C., Meskauskiene, R., Zhang, S., Lee, K.P., Lakshmanan Ashok, M., Blajecka, K., Herrfurth, C., Feussner, I., and Apel, K.
      Plant Cell 24,  3026-3039
      Full text...
    • Arabidopsis light-dependent NADPH: protochlorophyllide oxidoreductase A (PORA) is essential for normal plant growth and development: an addendum 2012

      Kim, C. and Apel, K.
      Plant Mol. Biol. 80,  237-24
      Full text...
    • FLU, a negative feedback regulator of tetrapyrrole biosynthesis, is physically linked to the final steps of the Mg++-branch of this pathway 2012

      Kauss, D., Bischof, S., Steiner, S., Apel, K. and Meskauskiene, R.
      FEBS Lett. 586,  211-216
      Full text...
    • ‘happy on norflurazon’ (hon) mutations implicate perturbance of plastid homeostasis with activating stress acclimatization and changing nuclear gene expression in norflurazon-treated seedlings 2011

      Saini, G., Meskauskiene, R., Pijacka, W., Roszak, P., Sjogren, L.L.E., Clarke, A.K., Straus , M. and Apel, K.
      Plant J. 65,  690-702
      Full text...
    • Arabidopsis mutants reveal multiple singlet oxygen signaling pathways involved in stress response and development 2009

      Baruah, A., Simkova, K., Apel, K. and Laloi, C.
      Plant Mol. Biol. 70,  547-563
      Full text...
    • Modulation of O-1(2)-mediated retrograde signaling by the PLEIOTROPIC RESPONSE LOCUS 1 (PRL1) protein, a central integrator of stress and energy signaling 2009

      Baruah, A., Simkova, K., Hincha, D.K., Apel, K. and Laloi, C.
      Plant J. 60,  22-32
      Full text...
    • Characterization of soldat8, a Suppressor of Singlet Oxygen-Induced Cell Death in Arabidopsis Seedlings 2009

      Coll, N.S., Danon, A., Meurer, J., Cho, W.K. and Apel, K.
      Plant Cell Physiol. 50,  707-718
      Full text...
    • O-1(2)-mediated retrograde signaling during late embryogenesis predetermines plastid differentiation in seedlings by recruiting abscisic acid 2009

      Kim, C., Lee, K.P., Baruah, A., Nater, M., Gobel, C., Feussner, I., and Apel, K.
      P. Natl. Acad. Sci. USA 106,  9920-9924
      Full text...
    • A mutation in the Arabidopsis mTERF-related plastid protein SOLDAT10 activates retrograde signaling and suppresses 1O(2)-induced cell death 2009

      Meskauskiene, R., Wursch, M., Laloi, C., Vidi, P.A., Coll, N.S., Kessler, F., Baruah, A., Kim, C. and Apel, K.
      Plant J. 60,  399-410
      Full text...
    • No single way to understand singlet oxygen signalling in plants 2008

      Kim, C., Meskauskiene, R., Apel, K., and Laloi, C.
      EMBO Rep. 9,  435-439
      Full text...
    • Cross-talk between singlet oxygen- and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana 2007

      Laloi, C, Stachowiak, M., Pers-Kamczyc, E., Warzych, E., Murgia, I., and Apel, K.
      P. Natl. Acad. Sci. USA 104,  672-677
      Full text...
    • EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana 2007

      Lee, K.P., Kim, C., Landgraf, F., and Apel, K.
      P. Natl. Acad. Sci. USA 104,  10270-10275
      Full text...
    • A genetic approach towards elucidating the biological activity of different reactive oxygen species in Arabidopsis thaliana 2006

      Laloi, C., Przybyla, D., and Apel, K.
      J. Exp. Bot. 57,  1719-1724
      Full text...
    • Reactive oxygen signalling: the latest news 2004

      Laloi, C., Apel, K., and Danon, A.
      Curr. Opin. Plant Biol. 7,  323-328
      Full text...
    • The Genetic basis of singlet oxygen-induced stress responses of Arabidopsis thaliana 2004

      Wagner, D., Przybyla, D., op den Camp, R., Kim, C., Landgraf, F., Lee, K.P., Wursch, M., Laloi, C., Nater, M., Hideg, E., and Apel, K.
      Science 306,  1183-1185
      Full text...
    • Rapid induction of distinct stress responses after the release of singlet oxygen in Arabidopsis 2003

      op den Camp, R.G., Przybyla, D., Ochsenbein, C., Laloi, C., Kim, C., Danon, A., Wagner, D., Hideg, E., Gobel, C., Fuessner, I., Nater, M., and Apel, K.
      Plant Cell 15,  2320-2332
      Full text...
    • Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta 2016

      Kanost, M.R., Arrese, E.L., Cao, X., Chen, Y.R., Chellapilla, S., Goldsmith, M.R., Grosse-Wilde, E., Heckel, D.G., Herndon, N., Jiang, H., et al
      Insect Biochem. Mol. Bio. 76,  118-147
      Full text...
    • Trichoplusia ni Kinesin-1 associates with AcMNPV nucleocapsid proteins and is required for the production of budded virus 2016

      Biswas, S., G. W. Blissard, and D. A. Theilmann
      Journal of Virology 90,  3480-3495
      Full text...
    • Autographa californica multiple nucleopolyhedrovirus GP64 protein: Analysis of domain I and V amino acid interactions and membrane fusion activity 2015

      Yu, Q., Blissard, G.W., Liu, T.X., Li, Z.
      Virology 488,  259-270
      Full text...
    • The immune signaling pathways of Manduca sexta 2015

      Cao, X., Y. He, Y. Hu, Y. Wang, Y. R. Chen, B. Bryant, R. J. Clem, L. M. Schwartz, G. Blissard, and H. Jiang
      Insect Biochem. Mol. Biol. 62,  64-74
      Full text...
    • Sequence conservation, phylogenetic relationships, and expression profiles of nondigestive serine proteases and serine protease homologs in Manduca sexta 2015

      Cao, X., He, Y., Hu, Y., Zhang, X., Wang, Y., Zou, Z., Chen, Y., Blissard, G.W., Kanost, M.R., and Jiang, H.
      Insect Biochem. Mol. Biol. 62,  51-63
      Full text...
    • A genome-wide analysis of antimicrobial effector genes and their transcription patterns in Manduca sexta 2015

      He, Y., Cao, X., Lia, K., Hua, Y., Chen, Y., Blissard, G., Kanost, M.R., and Jiang, H.
      Insect Biochem. Mol. Biol. 62,  23-37
      Full text...
    • Special Issue: Biological Insights from the Manduca sexta genome 2015

      Kanost, M. R., and G. W. Blissard (ed.)
      Insect Biochem. Mol. Biol. 2015/05/24 ed, vol. 62
      Full text...
    • The vacuolar protein sorting genes in insects: A comparative genome view 2015

      Li, Z., and Blissard, G.W.
      Insect Biochem. Mol. Biol. 62,  211-225
      Full text...
    • Structural features, evolutionary relationships, and transcriptional regulation of C-type lectin-domain proteins in Manduca sexta 2015

      Rao, X-J., 1, Cao, X., He, Y., Hu, Y., Zhang, X., Chen, Y., Blissard, G., Kanost, M.R., Yu, X-Q., and Jiang, H.
      Insect Biochem. Mol. Biol. 62,  75-85
      Full text...
    • Autographa californica multiple nucleopolyhedrovirus GP64 protein: Analysis of domain I and V amino acid interactions and membrane fusion activity 2015

      Yu, Q., G. W. Blissard, T. X. Liu, and Z. Li.
      Virology 488,  259-270
      Full text...
    • Analysis of chitin-binding proteins from Manduca sexta provides new insights into evolution of peritrophin A-type chitin-binding domains in insects 2015

      Tetreau, G., N. T. Dittmer, X. Cao, S. Agrawal, Y. R. Chen, S. Muthukrishnan, J. Haobo, G. W. Blissard, M. R. Kanost, and P. Wang.
      Insect Biochem. Mol. Biol. 62,  127-141
      Full text...
    • Cellular VPS4 is required for efficient entry and egress of budded virions of Autographa californica multiple nucleopolyhedrovirus 2012

      Li, Z., and Blissard, G.W.
      J. Virol. 86,  459-472
      Full text...
    • Functional analysis of the Autographa californica multiple nucleopolyhedrovirus GP64 terminal fusion loops and interactions with membranes 2012

      Dong, S., and Blissard, G.W.
      J. Virol. 86,  9617-9628
      Full text...
    • Autographa californica multiple nucleopolyhedrovirus GP64 protein: Roles of histidine residues in triggering membrane fusion and fusion pore expansion 2011

      Li, Z., and Blissard, G.W.
      J. Virol. 85,  12492-12504
      Full text...
    • Correction: BTI-Tnao38, a new cell line derived from Trichoplusia ni, is permissive for AcMNPV infection and produces high levels of recombinant proteins 2012

      Hashimoto, Y., Zhang, S., Zhang, S., Chen, Y.R., and Blissard, G.W.
      BMC Biotechnol 12:12
      Full text...
    • The Autographa californica multiple nucleopolyhedrovirus lef-5 gene is required for productive infection 2011

      Su, J., Lung, O., and Blissard, G.W.
      Virology 416,  54-64
      Full text...
    • Transcriptome responses of the host, Trichoplusia ni, to infection by the baculovirus, Autographa californica Multiple Nucleopolyhedrovirus (AcMNPV) 2014

      Chen, Y. R., Zhong, S., Fei, Z., Gao, S., Zhang, S., Li, Z., Wang, P., and Blissard, G.W.
      J. Virol. 88,,  13781-13797
      Full text...
    • Baculovirus GP64 disulfide bonds: the intermolecular disulfide bond of Autographa californica multicapsid nucleopolyhedrovirus GP64 is not essential for membrane fusion and virion budding 2010

      Li, Z., and Blissard, G.W.
      J. Virol. 84,  8584-8595
      Full text...
    • Ao38, a new cell line from eggs of the black witch moth, Ascalapha odorata (Lepidoptera: Noctuidae), is permissive for AcMNPV infection and produces high levels of recombinant proteins 2010

      Hashimoto, Y., Zhang, S., and Blissard, G.W.
      BMC Biotechnol. 10,  50
      Full text...
    • The pre-transmembrane domain of the Autographa californica multicapsid nucleopolyhedrovirus GP64 protein is critical for membrane fusion and virus infectivity 2009

      Li, Z., and Blissard, G.W.
      J. Virol. 83,  10993-11004
      Full text...
    • The Autographa californica multicapsid nucleopolyhedrovirus GP64 protein: analysis of transmembrane domain length and sequence requirements 2009

      Li, Z., and Blissard, G.W.
      J. Virol. 83,  4447-4461
      Full text...
    • Baculoviruses: Molecular Biology of Nucleopolyhedroviruses 2008

      Theilmann, D.A., and Blissard, G.W
      Desk Encyclopedia of General Virology (Mahy, B.W.J. and van Regenmortel, M. eds) Oxford, Elsevier,  434-444
      Full text...
    • Functional analysis of the transmembrane (TM) domain of the Autographa californica multicapsid nucleopolyhedrovirus GP64 protein: Substitution of heterologous TM domains 2008

      Li, Z., and Blissard, G.W.
      J. Virol. 82,  3329-3341
      Full text...
    • Display of heterologous proteins ongp64null baculovirus virions and enhanced budding mediated by a vesicular stomatitis virus G-stem construct 2008

      Zhou, J., and Blissard, G.W.
      J. Virol. 82,  1368-1377
      Full text...
    • Identification of a GP64 subdomain involved in receptor binding by budded virions of the baculovirus Autographica californica multicapsid nucleopolyhedrovirus 2008

      Zhou, J., and Blissard, G.W.
      J. Virol. 82,  4449-4460
      Full text...
    • The AcMNPV pp31 gene is not essential for productive AcMNPV replication or late gene transcription but appears to increase levels of most viral transcripts 2007

      Yamagishi, J., Burnett, E.D., Harwood, S.H., and Blissard, G.W.
      Virol. 365,  34-47
      Full text...
    • Insect cell culture and biotechnology 2007

      Granados, R.R., Li, G., and Blissard, G.W.
      Virol. Sinicia 365,  34-47
      Full text...
    • Mapping the conformational epitope of a neutralizing antibody (AcV1) directed against the AcMNPV GP64 protein 2006

      Zhou, J., and Blissard, G.W.
      Virol. 352,  427-437
      Full text...
    • On the classification and nomenclature of baculoviruses: A proposal for revision 2006

      Jehle, J.A., Blissard, G.W., Bonning, B.C., Cory, J.S., Herniou, E.A., Rohrmann, G.F., Theilmann, D.A., Thiem, S.M., and Vlak, J.M.
      Virol. 151,  1257-1266
      Full text...
    • Persistent Gene Expression in Mouse Nasal Epithelia Following Feline Immunodeficiency Virus-based Vector Gene Transfer 2005

      Sinn, P. L., Burnight, E.R., Hickey, M.A., Blissard, G.W., and McCray, P.B.
      J. Virol. 79,  12818-12827
      Full text...
    • A Cellular Drosophila melanogaster Protein with Similarity to Baculovirus F Envelope Fusion Proteins 2005

      Lung, O., and Blissard, G.W.
      J. Virol. 79,  7979-7989
      Full text...
    • Baculoviridae 2005

      Theilmann, D.A., Blissard, G.W., Bonning, B., Jehle, J., O'Reilly, D.R., Rohrmann, G.F., Thiem, S., and Vlak, J.M.
      Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses (H. V. Van Regenmortel, D.H.L. Bishop, M. H. Van Regenmortal and C.M. Fauquet, eds.) Elsevier, NY 0:,  177-185
      Full text...
    • Palmitoylation of theAutographa californica multicapsid nucleopolyhedrovirus envelope glycoprotein GP64: mapping, functional studies, and lipid rafts 2003

      Zhang, S. X. X., Han, Y., and Blissard, G.W.
      J. Virol. 77,  6265-6273
      Full text...
    • Ac23, an envelope fusion protein homolog in the baculovirus Autographa californica multicapsid nucleopolyhedrovirus, is a viral pathogenicity factor 2003

      Lung, O. Y., Cruz Alvarez, M., and Blissard, G.W.
      J. Virol. 77,  328-339
      Full text...
    • Analysis of an Autographa californica nucleopolyhedrovirus lef-11 knockout: LEF-11 is essential for viral DNA replication 2002

      Lin, G., and Blissard, G.W.
      J. Virol. 76,  2770-2779
      Full text...
    • Analysis of an Autographa californica Multicapsid Nucleopolyhedrovirus lef-6-Null Virus: LEF-6 is not essential for viral replication but appears to accelerate late gene transcription 2002

      Lin, G., and Blissard, G.W.
      J. Virol. 76,  5503-5514
      Full text...
    • Pseudotyping Autographa californica Multicapsid Nucleopolyhedrovirus (AcMNPV): F proteins from group II NPVs are functionally analogous to AcMNPV GP64 2002

      Lung, O., Westenberg, M., Vlak, J.M., Zuidema, D., and Blissard, G.W.
      J. Virol. 76,  5729-5736
      Full text...
    • Stable cell lines expressing baculovirus P35: Resistance to apoptosis and nutrient stress, and increased glycoprotein secretion 2001

      Lin, G., Li, G., Granados, R.R., and Blissard, G.W.
      Vitro Cellular & Developmental Biology - Animal 37,  293-302
      Full text...
    • Expression and localization of LEF-11 in Autographa californica nucleopolyhedrovirus infected Sf9 cells 2001

      Lin, G., Slack, J.M., and Blissard, G.W.
      J. Gen. Virol. 82,  2289-2294
      Full text...
    • A GP64null baculovirus pseudotyped with Vesicular Stomatitis Virus G protein 2001

      Mangor, J. T., Monsma, S.A., Johnson, M.C., and Blissard, G.W.
      J. Virol. 75,  2544-2556
      Full text...
    • Measurement of membrane fusion activity from viral membrane fusion proteins based on a fusion-dependent promoter induction system in insect cells 2001

      Slack, J. M., and Blissard, G.W.
      J. Gen. Virol. 82,  2519-2529
      Full text...
    • A Novel Baculovirus Envelope Fusion Protein with a Proprotein Convertase Cleavage Site 2000

      IJkel, W. F. J., Westenberg, M., Goldbach, R.W., Blissard, G.W., Vlak, J.M., and Zuidema, D.
      Virol. 275,  30-41
      Full text...
    • Comprehensive Tissue-Specific Transcriptome Analysis Reveals Distinct Regulatory Programs during Early Tomato Fruit Development 2016

      Pattison, R.J., Csukasi, F., Zheng, Y., Fei, Z., van der Knaap, E., Catala, C
      Plant Physiology 10.1104,  pp.​15.​00287
      Full text...
    • Mechanisms regulating auxin action during fruit development 2014

      Pattison, R. J., Csukasi, F., and Catalá, C.
      Physiologia Plantarum 151,  62-72
      Full text...
    • Evaluating auxin distribution in tomato (Solanum lycopersicum) through an analysis of the PIN and AUX/LAX gene families 2012

      Pattison, R.J., and Catala, C.
      Plant J. 70,  585-598
      Full text...
    • Towards characterization of the glycoproteome of tomato (Solanum lycopersicum) fruit using Concanavalin A lectin affinity chromatography and LC-MALDI-MS/MS analysis 2011

      Catala, C., Howe, K.J., Hucko, S., Rose, J.K.C., and Thannhauser, T.W.
      Proteomics 11,  1530-1544
      Full text...
    • A Tomato Endo-Β-1,4-glucanase, SlCel9C1, Represents a Distinct Subclass with a New Family of Carbohydrate Binding Modules (CBM49) 2007

      Urbanowicz, B.R., and Catala, C.
      J. Biol. Chem. 282,  12066-12074
      Full text...
    • Sample extraction techniques for enhanced proteomic analysis of plant tissues 2006

      Isaacson, T., Damasceno, C.M.B., Saravanan, R.S., He, Y., and Catala, C.
      Nature Protocols 1,  769-774
      Full text...
    • Characterization of a new xyloglucan endotransglucosylase/hydrolase (XTH) from ripening tomato fruit and implications for the diverse modes of enzymic action 2006

      Saladi, M., Rose, J.K.C., Cosgrove, D.J., and Catala, C.
      Plant J. 47,  282-295
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    • The plot thickens: new perspectives of primary cell wall modification 2004

      Rose J.K., Saladi, M., and Catala, C.
      Curr. Opin. Plant Biol. 7,  296-301
      Full text...
    • Plant cell wall disassembly. 2003

      Rose J.K.C., and Catala, C.
      In The Plant Cell Wall. Annual Plant Reviews Series (Ed. J.K.C. Rose, Pub). Blackwell Publishing 264-324
      Full text...
    • Characterization of a tomato xyloglucan endotransglycosylase gene that is down-regulated by auxin in etiolated hypocotyls. Plant Physiol., 127, 1180-1192 2001

      Catala, C., Rose, J.K.C., York, W.S., Albersheim, P., Darvill, A.G., and Bennett, A.B.
      Plant Physiol. 127,  1180-1192
      Full text...
    • Auxin-regulated genes encoding cell wall modifying proteins are expressed during early tomato fruit growth 2000

      Catala, C., Rose, J.K.C., and Bennett, A.B.
      Plant Physiol. 122,  527-534
      Full text...
    • Cloning and sequence analysis of TomCel8; a new plant endo-1,4-Β-d-glucanase gene, encoding a protein with a putative carbohydrate binding domain (Accession No. AF098292) 1998

      Catala, C.
      Plant Physiol. 118,  1535
      Full text...
    • Auxin-induction and spatial localization of a novel endo-1,4-Β-d-glucanase and a xyloglucan endotransglycosylase in tomato hypocotyls 1997

      Catala, C., Rose, J.K.C., and Bennett, A.B.
      Plant J. 12,  417-426
      Full text...
    • The Potato leafroll virus structural proteins manipulate overlapping, yet distinct protein interaction networks during infection 2015

      DeBlasio, S.L., Johnson, R., Sweeney, M.M., Karasev, A., Gray, S.A., MacCoss, M.J., and Cilia, M.
      Proteomics DOI: 10.1002,  pmic.201400594
      Full text...
    • Is there a role for symbiotic bacteria in plant virus transmission by insects? 2015

      Pinheiro, P., Kliot, A., Ghanim, M., and Cilia, M.
      Current Opinion in Insect Science 8,  1–10
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    • Insights into the polerovirus-plant interactome revealed by co-immunoprecipitation and mass spectrometry 2014

      DeBlasio, S.L., Johnson, R., Mahoney, J., Karasev, A., Gray, S., MacCoss, M.J., and Cilia, M.
      Mol. Plant Microbe Interact 0:ja
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    • Circulative, “Nonpropagative” Virus Transmission: An orchestra of virus, insect and plant derived instruments 2014

      Gray, S.M., Cilia, M., and Ghanim, M.
      Adv. Virus Res. 89,  141-199
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    • Infection of the whitefly Bemisia tabaci with Rickettsia spp. alters its interactions with Tomato yellow leaf curl virus 2014

      Kliot, A., Cilia, M., Corso, T., Czosnek, H., and Ghanim, M.
      J. Virol. 88(10),  5652-5660
      Full text...
    • Evidence for the biochemical basis of host virulence in the greenbug, Schizaphis graminum (Homoptera: Aphididae) 2014

      Pinheiro, P., Bereman, M.S., Burd, J., Pals, M., Armstrong, S., Howe, K.J., Thannhauser, T.W., MacCoss, M.J., Gray, S.M. and Cilia, M.
      J. Proteome Res. 13(4),  2094-2108
      Full text...
    • Genomic and proteomic analysis of Schizaphis graminum reveals cyclophilin proteins are involved in the transmission of Cereal yellow dwarf virus 2013

      Tamborindeguy, C., Bereman, M.S., DeBlasio, S., Igwe, D., Smith, D.M., White, F., MacCoss, M.J., Gray, S.M., and Cilia, M.
      PLoS ONE 8(8),  e71620
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    • Discovery and targeted LC-MS/MS of purified polerovirus reveals differences in the virus-host interactome associated with altered aphid transmission 2012

      Cilia, M., Peter, K., Bereman, M., Howe, K., Fish, T., Smith, D., Gildow, F., MacCoss, M., Thannhauser, T., and Gray, S.M.
      PLoS ONE 7(10),  e48177
      Full text...
    • Tangible benefits of the pea aphid genome sequencing and annotation for aphid proteomics: enhancements in protein identification and data validation for homology-based proteomics.. J. Insect Physiol., 57, 179-190 2011

      Cilia, M., Tamborindeguy, C., Rolland, M., Howe, K., Thannhauser, T., and Gray, S.
      J. Insect Physiol. 57,  179-190
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    • Genetics Coupled to Quantitative Intact Proteomics Links Heritable Aphid and Endosymbiont Protein Expression to Circulative Polerovirus Transmission. J. Virol., 85, 2148-2166. [featured on issue cover] 2010

      Cilia, M., Tamborindeguy, C., Fish, T., Howe, K., Thannhauser, T., and Gray, S.
      J. Virol. 85,  2148-2166 [featured on issue cover]
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    • Cross-linking measurements of the Potato leafroll virus reveal protein interaction topologies required for virion stability, aphid transmission, and virus-plant interactions. J. Proteome Res., 11, 2968-2981. *Co-senior authors. 2012

      Chavez, J.D.*, Cilia, M.*, Weisbrod, C.R., Ju, H.J., Eng, J.K., Gray, S.M., and Bruce, J.E.
      J. Proteome Res. 11,  2968-2981. *Co-senior authors.
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    • A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins. J. Biomol. Tech., 20, 201-215. 2009

      Cilia, M., Fish, T., Yang, X., McLaughlin, M., Thannhauser, T.W., and Gray, S.
      J. Biomol. Tech. 20,  201-215
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    • Homopteran vector biomarkers for circulative plant virus transmission are expressed in multiple aphid species and the whitefly, Bemisia tabaci 2012

      Cilia, M., Bereman, M., Fish, T., MacCoss, M., and Gray, S.
      Journal of Integrative Agricultural Special Issue: The whitefly Bemisia tabaci species complex and begomoviruses, 11(2),  249-262
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    • Control of Arabidopsis meristem development by thioredoxin-dependent regulation of intercellular transport 2009

      Benitez-Alfonso, Y., Cilia, M., San Roman, A., Thomas, C., Maule, A., Hearn, S., and Jackson, D.
      P. Natl. Acad. Sci. USA 106,  3615-20
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    • Towards sustaining women through critical transition points in scientific careers: a workshop summary 2009

      Cilia, M.
      J. Biomol. Tech. 19,  353-355
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    • Plasmodesmata form and function 2004

      Cilia, M., and Jackson, D.
      Curr. Opin. Cell Biol. 16,  500-506
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    • Plasmodesmata 2001: On safari through the symplast 2002

      Cilia, M., Cantrill, L., and van Bel, A.
      The Plant Cell 14,  7-10
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    • EXO70I is essential for development of a sub-domain of the periarbuscular membrane during arbuscular mycorrhizal symbiosis. 2015

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    • Suppression of Arbuscule Degeneration in Medicago truncatula phosphate transporter4 Mutants Is Dependent on the Ammonium Transporter 2 Family Protein AMT2;3 2015

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    • Using membrane transporters to improve crops for sustainable food production 2013

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    • Transgenic expression of phytase and acid phosphatase genes in alfalfa (Medicago sativa) leads to improved phosphate uptake in natural soils 2012

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    • Polar localization of a symbiosis-specific phosphate transporter is mediated by a transient reorientation of secretion 2012

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    • 3D imaging and mechanical modeling of helical buckling in Medicago truncatula plant roots 2012

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    • Medicago truncatula mtpt4 mutants reveal a role for nitrogen in the regulation of arbuscule degeneration in arbuscular mycorrhizal symbiosis 2011

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    • Medicago truncatula Vapyrin is a novel protein required for arbuscular mycorrhizal symbiosis 2010

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    • Genetic variation for root architecture, nutrient uptake and mycorrhizal colonisation in Medicago truncatula accessions 2010

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    • Two Medicago truncatula half-ABC transporters are essential for arbuscule development in arbuscular mycorrhizal symbiosis 2010

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    • Reprogramming plant cells for endosymbiosis 2009

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    • Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis 2009

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    • Novel plant and fungal AGP-like proteins in the Medicago truncatula-Glomus intraradices arbuscular mycorrhizal symbiosis 2008

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    • The Medicago truncatula ortholog of Arabidopsis EIN2, sickle, is a negative regulator of symbiotic and pathogenic microbial associations 2008

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    • A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi 2002

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    • A chloroplast phosphate transporter, PHT2;1, influences allocation of phosphate within the plant and phosphate-starvation responses 2002

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    • Tomato receptor FLAGELLIN-SENSING 3 activates plant immunity. Submitted. 2015

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    • The COP9 signalosome controls jasmonic acid synthesis and plant responses to herbivory and pathogens 2011

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    • Wounding systemically activates a mitogen-activated protein kinase in forage and turf grasses 2011

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    • The raison d’etre of chemical ecology 2015

      Raguso, R. A., Agrawal, A. A., Douglas, A. E., Jander, G., Kessler, A., Poveda, K., Thaler, J. S.
      Ecology 10.1890,  14-1474.1
      Full text...
    • Adaptation to nicotine in the facultative tobacco-feeding hemipteran Bemisia tabaci 2014

      Kliot, A., Kontsedalov, S., Ramsey, J. S., Jander, G., Ghanim, A.
      Pest Management Science 10.1002,  ps.3739
      Full text...
    • Matching the supply of bacterial nutrients to the nutritional demand of the animal host 2014

      Russell, C.W., Poliakov, A., Haribal, M., Jander, G., van Wijk, K. J., Douglas, A. E.
      Proceedings of the Royal Society B-Biological Sciences 10.1098,  rspb.2014.1163
      Full text...
    • The catabolic enzyme methionine gamma-lyase limits methionine accumulation in potato tubers 2014

      Huang, T. F., Joshi, V., Jander, G.
      Plant Biotechnology Journal 10.1111,  pbi.12191
      Full text...
    • Adaptation to Nicotine Feeding in Myzus persicae 2014

      Ramsey, J. S., Elzinga, D. A., Sarkar, P., Xin, Y. R., Ghanim, M., Jander, G.
      J. Chem. Ecol. 40,  869-877
      Full text...
    • The NIa-Pro protein of turnip mosaic virus Improves growth and reproduction of the aphid vector, Myzus persicae (green peach aphid) 2014

      Casteel, C.L., Yang, C., Nanduri, A.C., De Jong, H.N., Whitham, S.A., and Jander, G.
      Plant Journal 10.1111,  tpj.12417
      Full text...
    • Alteration of Plant Primary Metabolism in Response to Insect Herbivory 2015

      Zhou S.Q., Lou, Y.R., Tzin, V., Jander, G.
      Plant Physiology 10.1104,  pp.15.01405
      Full text...
    • Disrupting Buchnera aphidicola, the endosymbiotic bacteria of Myzus persicae, delays host plant acceptance 2015

      Machado-Assefh, C. R., Lopez-Isasmendi, G., Tjallingii, W.F., Jander, G., Alvarez, A. E.
      Arthropod-Plant Interactions 0.1007/s11829-015-9394-8
      Full text...
    • Maize death acids, 9-lipoxygenase-derived cyclopente(a)nones, display activity as cytotoxic phytoalexins and transcriptional mediators 2015

      Christensen, S. A., Huffaker, A., Kaplan, F., Sims, J., Ziemann, S., Doehlemann, G., Ji, L. X., Schmitz, R. J., Kolomiets, M. V., Alborn, H. T., Mori, N, Jander, G., Ni, X. Z., Sartor, R. C., Byers, S., Abdo, Z., Schmelz E.A.
      Proceedings of the National Academy of Sciences of the United States of America 10.1073,  pnas.1511131112
      Full text...
    • Disruption of Ethylene Responses by Turnip mosaic virus Mediates Suppression of Plant Defense against the Green Peach Aphid Vector 2015

      Casteel C.L., De Alwis, M., Bak, A., Dong, H. L., Witham, S.A., Jander, G.
      Plant Physiology 10.1104/pp.15.00332 Plant Physiology 10.1104/pp.15.00332,  Plant Physiology 10.1104/pp.15.00332
      Full text...
    • RNA interference against gut osmoregulatory genes in phloem-feeding insects 2015

      Tzin, V., Yang, X. V., Jing, X.F., Zhang, K., Jander, G., Douglas, A. E.
      Journal of Insect Physiology 10.1016,  j.jinsphys.2015.06.006
      Full text...
    • The glucosinolate breakdown product indole-3-carbinol acts as an auxin antagonist in roots of Arabidopsis thaliana 2015

      Katz, E., Nisani, S., Yadav, B. S., Woldemariam, M. G., Shai, B., Obolski, U., Ehrlich, M., Shani, E., Jander, G., Chamovitz, B. A.
      Plant Journal /tpj.12824,  tpj.12824
      Full text...
    • Abscisic acid deficiency increases defence responses against Myzus persicae in Arabidopsis 2016

      Hillwig, M.S., Chiozza, M., Casteel, C.L., Lau, S.T.,Hohenstein, J., Hernandez, E., Jander, G., MacIntosh, G.C.
      Molecular Plant Pathology 10.1111,  mpp.12274
      Full text...
    • Stable isotope studies reveal pathways for the incorporation of non-essential amino acids in Acyrthosiphon pisum (pea aphids) 2015

      Haribal, M., Jander, G.
      Journal Of Experimental Biology 10.1242,  jeb.129189
      Full text...
    • New synthesis: investigating mutualisms in virus-vector interactions 2013

      Casteel, C.L., and Jander, G.
      Journal of Chemical Ecology 39,  809
      Full text...
    • Introducing the USA Plant, Algae and Microbial Metabolomics Research Coordination Network (PAMM-NET) 2015

      Sumner, L.W., Styczynski, M., McLean, J., Fiehn, O., Jander, G., Liao, J., Sumner, S., Britz-McKibbin, P., Welti, R., Jones, A.D., Dorrestein, P.C., Bearden, D., and Kaddurah-Daouk, R.
      Metabolomics 11,  3–5
      Full text...
    • Additive effects of two quantitative trait loci that confer Rhopalosiphum maidis (corn leaf aphid) resistance in maize inbred line Mo17 2014

      Betsiashvili, M., Ahern, K.R., and Jander, G.
      J. Exp. Bot., 66(2),  571-578
      Full text...
    • Revisiting plant-herbivore co-evolution in the molecular biology era 2014

      Jander, G.
      Annual Plant Reviews 47,  361-384
      Full text...
    • Adaptation to nicotine feeding in Myzus persicae. Journal of Chemical Ecology 2014

      Ramsey, J.S., Elzinga, D.A., Xin, Y.-R., Sarkar, P., and Jander, G.
      in press
      Full text...
    • Suppression of plant defenses by a Myzus persicae (green peach aphid) salivary effector protein 2014

      Elzinga, D.A., De Vos, M., and Jander, G.
      Mol. Plant Microbe In. 27,  747–756
      Full text...
    • The catabolic enzyme methionine gamma-lyase limits methionine accumulation in potato tubers 2014

      Huang, T., Joshi, V., and Jander, G.
      Plant Biotechnology Journal 12(7),  883–893
      Full text...
    • Adaptation to nicotine in the facultative tobacco-feeding hemipteran Bemisia tabaci 2014

      Kliot, A., Kontsedalov, S., Ramsey, J.S., Jander, G., and Ghanim, M.
      Pest Manag. Sci. 70,  1595-1603
      Full text...
    • The role of protein effectors in plant-aphid interactions 2013

      Elzinga, D.A., and Jander, G.
      Curr. Opin. Plant Biol. 16,  451-456
      Full text...
    • Comparative analysis of genome sequences from four strains of the Buchnera aphidicola Mp endosymbion of the green peach aphid, Myzus persicae 2013

      Jiang, Z.J., Jones, D.H., Khuri, S., Tsinoremas, N.F., Wyss, T., Jander, G., and Wilson, A.C.C.
      BMC Genomics 14,  917
      Full text...
    • Near-isogenic lines for measuring phenotypic effects of DIMBOA-Glc methyltransferase activity in maize 2013

      Mijares, V., Meihls, L., Jander, G., and Tzin, V.
      Plant Signaling & Behavior 8,  e26779
      Full text...
    • Interdependence of threonine, methionine and isoleucine metabolism in plants: accumulation and transcriptional regulation under abiotic stress 2010

      Joshi, V., Joung, J.G., Fei, Z. and Jander, G.
      Amino Acids 39,  933-947
      Full text...
    • Transgenerational defense induction and epigenetic inheritance in plants 2012

      Holeski, L.M., Jander, G., and Agrawal, A.A.
      Trends in Ecology & Evolution 27,  618-626
      Full text...
    • meta-Tyrosine in Festuca rubra ssp. commutata (Chewings fescue) is synthesized by hydroxylation of phenylalanine 2012

      Huang, T., Rehak, L., and Jander, G.
      Phytochemistry 75,  60-66
      Full text...
    • Timely plant defenses protect against caterpillar herbivory 2012

      Jander, G.
      P. Natl. Acad. Sci. U S A 109,  4343-4344
      Full text...
    • Natural variation in maize defense against insect herbivores 2012

      Meihls, L.N., Kaur, H., and Jander, G.
      Cold Spring Harb. Symp. Quant. Biol. 77,  269-283
      Full text...
    • Engineering of benzylglucosinolate in tobacco provides proof-of-concept for dead-end trap crops genetically modified to attract Plutella xylostella (diamondback moth) 2012

      Moldrup, M.E., Geu-Flores, F., de Vos, M., Olsen, C.E., Sun, J., Jander, G., and Halkier, B.A.
      Plant Biotechnology Journal 10,  435-442
      Full text...
    • Herbivory in the previous generation primes plants for enhanced insect resistance 2012

      Rasmann, S., De Vos, M., Casteel, C.L., Tian, D.L., Halitschke, R., Sun, J.Y., Agrawal, A.A., Felton, G.W., and Jander, G.
      Plant Physiology 158,  854-863
      Full text...
    • Insecticide resistance mechanisms in the green peach aphid Myzus persicae (Hemiptera: Aphididae) I: a transcriptomic survey 2012

      Silva, A.X., Jander, G., Samaniego, H., Ramsey, J.S., and Figueroa, C.C.
      PLoS ONE 7,  e36366
      Full text...
    • Non-protein amino acids in plant defense against insect herbivores: representative cases and opportunities for further functional analysis 2011

      Huang, T., Jander, G., and de Vos, M.
      Phytochemistry 72,  1531-1537
      Full text...
    • New synthesis–plant defense signaling: new opportunities for studying chemical diversity 2011

      Jander, G., and Clay, N.
      J. Chem. Ecol. 37,  429
      Full text...
    • Biosynthesis and defensive function of Ndelta-acetylornithine, a jasmonate-induced Arabidopsis metabolite 2011

      Adio, A.M., Casteel, C.L., De Vos, M., Kim, J.H., Joshi, V., Li, B., Juery, C., Daron, J., Kliebenstein, D.J., and Jander, G.
      Plant Cell 23,  3303-3318
      Full text...
    • Differential effects of indole and aliphatic glucosinolates on lepidopteran herbivores 2010

      Muller, R., de Vos, M., Sun, J.Y., Sonderby, I.E., Halkier, B.A., Wittstock, U., and Jander, G.
      Journal of Chemical Ecology 36,  905-913
      Full text...
    • Antibiosis against the green peach aphid requires the Arabidopsis thaliana MYZUS PERSICAE-INDUCED LIPASE1 gene 2010

      Louis, J., Lorenc-Kukula, K., Singh, V., Reese, J., Jander, G., and Shah, J.
      Plant Journal 64,  800-811
      Full text...
    • Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana. 2010

      Huang, T., Tohge, T., Lytovchenko, A., Fernie, A.R., and Jander, G.
      Plant J. 63,  823-835
      Full text...
    • Recent progress in deciphering the biosynthesis of aspartate-derived amino acids in plants 2010

      Jander, G., and Joshi, V.
      Mol. Plant 3,  54-65
      Full text...
    • Volatile communication in plant-aphid interactions 2010

      de Vos, M., and Jander, G.
      Curr. Opin. Plant Biol. 13,  366-371
      Full text...
    • Alarm pheromone habituation in Myzus persicae has fitness consequences and causes extensive gene expression changes 2010

      de Vos, M., Cheng, W.Y., Summers, H.E., Raguso, R.A., and Jander, G.
      P. Natl. Acad. Sci. U S A 107,  14673-14678
      Full text...
    • Genomic evidence for complementary purine metabolism in the pea aphid, Acyrthosiphon pisum, and its symbiotic bacterium Buchnera aphidicola 2010

      Ramsey, J.S., MacDonald, S.J., Jander, G., Nakabachi, A., Thomas, G.H., and Douglas, A.E.
      Insect Mol. Biol. 19, Suppl 2,  241-248
      Full text...
    • Comparative analysis of detoxification enzymes in Acyrthosiphon pisum and Myzus persicae 2010

      Ramsey, J.S., Rider, D.S., Walsh, T.K., De Vos, M., Gordon, K.H., Ponnala, L., Macmil, S.L., Roe, B.A., and Jander, G.
      Insect Mol. Biol. 19, Suppl 2,  155-164
      Full text...
    • Non-volatile intact indole glucosinolates are host recognition cues for ovipositing Plutella xylostella 2010

      Sun, J.Y., Sonderby, I.E., Halkier, B.A., Jander, G., and de Vos, M.
      J. Chem. Ecol. 35(12),  1427-1436
      Full text...
    • Genome-enabled research on the ecology of plant-insect interactions 2010

      Whiteman, N.K., and Jander, G.
      Plant Physiology 154,  475-478
      Full text...
    • Genomic insight into the amino acid relations of the pea aphid, Acyrthosiphon pisum, with its symbiotic bacterium Buchnera aphidicola 2010

      Wilson, A.C.C., Ashton, P.D., Calevro, F., Charles, H., Colella, S., Febvay, G., Jander, G., Kushlan, P.F., Macdonald, S.J., Schwartz, J.F., Thomas, G.H., and Douglas, A.E.
      Insect Mol. Biol. 19,  249-258
      Full text...
    • Glucosinolate metabolites required for an Arabidopsis innate immune response 2009

      Clay, N.K., Adio, A.M., Denoux, C., Jander, G., and Ausubel, F.M.
      Science 323,  95-101
      Full text...
    • Arabidopsis methionine gamma-lyase is regulated according to isoleucine biosynthesis needs but plays a subordinate role to threonine deaminase 2009

      Joshi, V., and Jander, G.
      Physiology 151,  367-378
      Full text...
    • Myzus persicae (green peach aphid) salivary components induce defence responses in Arabidopsis thaliana 2009

      de Vos, M., and Jander, G.
      , 32, 1548-1560 32,  1548-1560
      Full text...
    • Indole glucosinolate breakdown and its biological effects 2009

      Agerbirk, N., de Vos, M., Kim, J.H., and Jander, G.
      Phytochem. Rev. 8,  101-120
      Full text...
    • Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content 2008

      Lee, M.S., Huang, T.F., Toro-Ramos, T., Fraga, M., Last, R.L., and Jander, G.
      Plant Journal 54,  310-320
      Full text...
    • Plant immunity to insect herbivores 2008

      Howe, G.A., and Jander, G.
      Annual Review of Plant Biology 59,  41-66
      Full text...
    • Choice and no-choice assays for testing the resistance of A. thaliana to chewing insects. 2008

      de Vos, M., and Jander, G.
      JoVE 15
      Full text...
    • Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design 2007

      Ramsey, J.S., Wilson, A.C.C., de Vos, M., Sun, Q., Tamborindeguy, C., Winfield, A., Malloch, G., Smith, D.M., Fenton, B., Gray, S.M., and Jander, G.
      BMC Genomics 8,  423
      Full text...
    • Indole-3-acetonitrile production from indole glucosinolates deters oviposition by Pieris rapae. 2008

      de Vos, M., Kriksunov, K.L., and Jander, G.
      Plant Physiology 146,  916-926
      Full text...
    • Biochemistry and molecular biology of Arabidopsis-aphid interactions 2007

      de Vos, M., Kim, J.H., and Jander, G.
      BioEssay 29,  871-883
      Full text...
    • Tandem gene arrays: a challenge for functional genomics 2007

      Jander, G., and Barth, C.
      Trends in Plant Science 12,  203-210
      Full text...
    • Arabidopsis Myrosinases TGG1 and TGG2 have Redundant Function in Glucosinolate Breakdown and Insect Defense 2006

      Barth, C., Jander, G.
      Plant J. 46,  549-562
      Full text...
    • Gene Identification and Cloning by Molecular Marker Mapping 2006

      Jander, G.
      Methods in Molecular Biology 323,  115-126
      Full text...
    • Prevention and control of pests and diseases 2006

      Bush, J., Jander, G., Ausubel, F.M.
      Methods Mol. Biol. 323,  13-25
      Full text...
    • The TASTY locus on chromosome 1 of Arabidopsis affects feeding of the insect herbivore Trichoplusia ni 2001

      Jander, G., Cui, J., Nhan, B., Pierce, N.E., and Ausubel F.M.
      Plant Physiology 126,  890-898
      Full text...
    • Ecological role of transgenerational resistance against biotic threats 2012

      Rasmann, S., De Vos, M., and Jander, G.
      Plant Signaling & Behavior 7,  447-449
      Full text...
    • Grass roots chemistry: meta-tyrosine, an herbicidal non-protein amino acid 2007

      C. Bertin, L. A. Weston, T. Huang, G. Jander, T. Owens, J. Meinwald, and F. C. Schroeder.
      P. Natl. Acad. Sci. USA 43,  16964-16969
      Full text...
    • Multiple targets of salicylic acid and its derivatives in plants and animals 2016

      Klessig, D. F., Tian, M., and Choi H.-W.
      Immunology (in review)
      Full text...
    • Activation of Plant Innate Immunity by Extracellular High Mobility Group Box 3 and Its Inhibition by Salicylic Acid 2016

      Choi, H.W., Manohar, M., Manosalva, P., Tian, M., Moreau, M., and Klessig, D.F.
      PLOS Pathog. 12,  e1005518
      Full text...
    • Newly identified targets of Aspirin and its primary metabolite, salicylic acid 2016

      Klessig, D.F.
      DNA Cell Biol. 35,  163-166
      Full text...
    • Aspirin’s Active Metabolite Salicylic Acid Targets Human High Mobility Group Box 1 to Modulate Inflammatory Responses 2015

      Choi, H.W., Tian, M., Song, F., Venereau, E., Preti, A., Park, S.W., Hamilton, K., Swapna, G.V.T., Manohar, M., Moreau, M., Agresti, A., Gorzanelli, A., De Marchis, F., Wang, H., Antonyak, M., Micikas, R., Gentile, D.R., Cerione, R.A., Schroeder, F.C., Montelione, G.T., Bianchi, M.E., and Klessig, D.F.
      Mol. Med. 21,  526-535
      Full text...
    • Human GAPDH is a target of aspirin’s primary metabolite salicylic acid and its derivatives 2015

      Choi, H.W., Tian, M., Manohar, M., Harraz, M.M., Park, S.-W., Schroeder, F.C., Snyder, S.H., and Klessig, D.F.
      PLOS ONE 10,  e0143447
      Full text...
    • Identification of multiple salicylic acid-binding proteins using two high throughput screens. Front 2015

      Manohar, M., Tian, M., Moreau, M., Park, S-W., Choi, H.W., Fei, Z., Friso, G., Asif, M., Manosalva, P., von Dahl, C.C., Shi, K., Ma, S., Dinesh-Kumar, S.P., O'Doherty, I., Schroeder, F.C., van Wijk, K.J., and Klessig, D.F.
      Plant Sci. 5,  777
      Full text...
    • Salicylic acid inhibits the replication of Tomato Bushy Stunt Virus by directly targeting a host component in the replication complex. 2015

      Tian, M., Sasvani, Z., Gonzalez, P.A., Friso, G., Rowland, E., Liu, X-M., van Wijk, K.J., Nagy, P.D., and Klessig, D.
      Molecular Plant-Microbe Interactions
      Full text...
    • Conserved nematode signaling molecules elicit plant defenses and pathogen resistance 2015

      Manosalva, P., Manohar, M., von Reuss, S.H., Chen, S., Micikas, R.J., Koch, A., Choe, A., Kaplan, F., Xiaohong Wang, X., Kogel, K-H., Sternberg, P.W., Williamson, V. M., Schroeder, F.C., and Klessig, D.F.
      Nature Comm 6,  7795
      Full text...
    • The GHKL ATPase MORC1 modulates species-specific plant immunity in Solanaceae 2015

      Manosalva, P., Manohar, M., Kogel, K-H., Kang, H-G., and Klessig, D.F.
      Molecular Plant-Microbe Interactions 28,  927-942
      Full text...
    • The Compromised Recognition of Turnip Crinkle Virus1 Subfamily of Microrchidia ATPases Regulates Disease Resistance in Barley to Biotrophic and Necrotrophic Pathogens 2014

      Langen, G., von Einem, S., Koch, A.,Imani, J., Pai, S.B., Manohar, M., Ehlers, K., Choi, H.W., Claar, M., Schmidt, R., Mang, H-G., Bordiya, Y., Kang, H-G., Klessig, D.F., and Kogel, K-H.
      Plant Physiology 164(2),  866-878.
      Full text...
    • Salicylic acid binding of mitochondrial alpha-ketoglutarate dehydrogenase E2, which interacts with the downstream mitochondrial electron transport chain, plays a crucial role in basal defense against TMV in tomato 2014

      Liao, Y., Tian, M., Zhang, H., Li, X., Xia, X., Zhou, J., Zhou, Y., Yul, J., Shi, K., and Klessig, D.F.
      New Phytologist doi: 10.1111,  nph13137
      Full text...
    • Crystal structure of the Arabidopsis thaliana TOP2 oligopeptidase. Acta. Crystallogr 2014

      Wang, R., Rajagopalan, K., Sadre-Bazzaz, K., Moreau, M., Klessig, D.F., and Tong, L.
      F. Struct. Biol. Commun. 70,  555
      Full text...
    • SOS – too many signals for systemic acquired resistance? 2012

      Dempsey, D.A., and Klessig, D.F.
      Trends Plant Sci. 17,  538-545
      Full text...
    • Structure of the Arabidopsis thaliana TOP2 oligopeptidase 2014

      Wang, R., Rajagopalan, K., Sadre-Bazzaz, K., Moreau, M., Klessig, D.F., and Tong, L.
      Acta Cryst. F70,  555–559
      Full text...
    • CRT1 is a nuclear-translocated MORC endonuclease that participates in multiple levels of plant immunity 2012

      Kang, H.G., Hyong, W.C., von Einem, S., Manosalva, P., Ehlers, K., Liu, P.P., Buxa, S.V., Moreau, M., Mang, H.G., Kachroo, P., Kogel, K.H., and Klessig, D.F.
      Nature Communications 3,  1297
      Full text...
    • Abscisic acid deficiency antagonizes high-temperature inhibition of disease resistance through enhancing nuclear accumulation of resistance proteins SNC1 and RPS4 in Arabidopsis 2012

      Mang, H.G., Qian, W.Q., Zhu, Y., Qian, J., Kang, H.G., Klessig, D.F., and Hua, J.
      Plant Cell 24,  1271-1284
      Full text...
    • Salicylic acid binds NPR3 and NPR4 to regulate NPR1-dependent defense responses 2012

      Moreau, M., Tian, M., and Klessig, D.F.
      Cell Res. 22,  1631-1633
      Full text...
    • The combined use of photoaffinity labeling and surface plasmon resonance-based technology identifies multiple salicylic acid-binding proteins 2012

      Tian, M., von Dahl, C.C., Liu, P.P., Friso, G., van Wijk, K.J., and Klessig, D.F.
      Plant J. 72,  1027-1038
      Full text...
    • Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation 2012

      Zheng, X.Y., Spivey, N.W., Zeng, W.Q., Liu, P.P., Fu, Z.Q., Klessig, D.F., He, S.Y., and Dong, X.N.
      Cell Host Microbe 11,  587-596
      Full text...
    • The extent to which methyl salicylate is required for signaling systemic acquired resistance is dependent on exposure to light after infection. 2011

      Liu, P.P., von Dahl, C.C., and Klessig, D.F.
      Plant Physiology 157,  2216-2226
      Full text...
    • Interconnection between methyl salicylate and lipid-based long-distance signaling during the development of systemic acquired resistance in Arabidopsis and tobacco 2011

      Liu, P.P., von Dahl, C.C., Park, S.W., and Klessig, D.F.
      Plant Physiology 155,  1762-1768
      Full text...
    • Salicylic acid biosynthesis and metabolism 2011

      Dempsey, D.A., Vlot, A.C., Wildermuth, M.C., and Klessig, D.F.
      In The Arabidopsis Book American Society of Plant Biologists e0156
      Full text...
    • NO synthesis and signaling in plants–where do we stand? 2010

      Moreau, M., Lindermayr, C., Durner, J., and Klessig, D.F.
      Physiol. Plant 138,  372-383
      Full text...
    • The lesion-mimic mutant cpr22 shows alterations in abscisic acid signaling and abscisic acid insensitivity in a salicylic acid-dependent manner 2010

      Mosher, S., Moeder, W., Nishimura, N., Jikumaru, Y., Joo, S.H., Urquhart, W., Klessig, D.F., Kim, S.K., Nambara, E., and Yoshioka, K.
      Plant Physiology 152,  1901-1913
      Full text...
    • Methyl esterase 1 (StMES1) is required for systemic acquired resistance in potato 2010

      Manosalva, P.M., Park, S.W., Forouhar, F., Tong, L., Fry , W.E., and Klessig, D.F.
      Mol. Plant Microbe Interact. , 1151-1163.,  1151-1163.
      Full text...
    • Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco 2010

      Kang, H.G., Oh, C.S., Sato, M., Katagiri, F., Glazebrook, J., Takahashi, H., Kachroo, P., Martin, G.B., and Klessig, D.F.
      Plant Cell 22,  918-936
      Full text...
    • Altering expression of benzoic acid/salicylic acid carboxyl methyltransferase 1 compromises systemic acquired resistance and PAMP-triggered immunity in arabidopsis 2010

      Liu, P.P., Yang, Y., Pichersky, E., and Klessig, D.F.
      Mol. Plant Microbe Interact. 23,  82-90
      Full text...
    • Systemic acquired resistance is induced by R gene-mediated responses independent of cell death. 2010

      Liu, P.P., Bhattacharjee, S., Klessig, D.F., and Moffett, P.
      Mol. Plant Pathol. 11,  155-160
      Full text...
    • Cryptochrome 2 and phototropin 2 regulate resistance protein-mediated viral defense by negatively regulating an E3 ubiquitin ligase 2010

      Jeong, R.D., Chandra-Shekara, A.C., Barman, S.R., Navarre, D., Klessig, D.F., Kachroo, A., and Kachroo, P.
      P. Natl. Acad. Sci. U S A 107,  13538-13543
      Full text...
    • Salicylic acid, a multifaceted hormone to combat disease 2009

      Vlot, A.C., Dempsey, D.A., and Klessig, D.F.
      Annu. Rev. Phytopathol. 47,  177-206
      Full text...
    • Use of a synthetic salicylic acid analog to investigate the roles of methyl salicylate and its esterases in plant disease resistance 2009

      Park, S.W., Liu, P.P., Forouhar, F., Vlot, A.C., Tong, L., Tietjen, K., and Klessig, D.F.
      Journal of Biological Chemistry 284,  7307-7317
      Full text...
    • Enhanced defense responses in Arabidopsis induced by the cell wall protein fractions from Pythium oligandrum require SGT1, RAR1, NPR1 and JAR1 2009

      Kawamura, Y., Takenaka, S., Hase, S., Kubota, M., Ichinose, Y., Kanayama, Y., Nakaho, K., Klessig, D.F., and Takahashi, H.
      Plant Cell Physiol. 50,  924-934
      Full text...
    • Identification of likely orthologs of tobacco salicylic acid-binding protein 2 and their role in systemic acquired resistance in Arabidopsis thaliana. 2008

      Vlot, A.C., Liu, P.P., Cameron, R.K., Park, S.W., Yang, Y., Kumar, D., Zhou, F.S., Padukkavidana, T., Gustafsson, C., Pichersky, E., and Klessig, D.F.
      Plant J. 56,  445-456
      Full text...
    • Systemic acquired resistance: the elusive signal(s) 2008

      Vlot, A.C., Klessig, D.F., and Park, S.W.
      Curr. Opin. Plant Biol. 11,  436-442
      Full text...
    • The Structure of YqeH: An AtNOS1/AtNOA1 ortholog that couples GTP hydrolysis to molecular recognition 2008

      Sudhamsu, J., Lee, G.I., Klessig, D.F., and Crane, B.R.
      Journal of Biological Chemistry, 283,  32968-32976
      Full text...
    • High level expression of a virus resistance gene, RCY1, confers extreme resistance to Cucumber mosaic virus in Arabidopsis thaliana 2008

      Sekine, K.T., Kawakami, S., Hase, S., Kubota, M., Ichinose, Y., Shah, J., Kang, H.G., Klessig, D.F., and Takahashi, H.
      Mol. Plant Microbe Interact. 21,  1398-1407
      Full text...
    • AtNOS/AtNOA1 Is a Functional Arabidopsis thaliana cGTPase and Not a Nitric-oxide Synthase 2008

      Moreau, M., Lee, G.I., Wang, Y., Crane, B.R., and Klessig, D.F.
      Journal of Biological Chemistry 283,  32957-32967
      Full text...
    • Plant resistance to viruses: Natural resistance associated with dominant genes 2008

      Moffett, P., and Klessig, D.F.
      In Encyclopedia of Virology (Mahy, B.W.J. and van Regenmortel, M. eds) Oxford 0: Elsevier
      Full text...
    • Methyl salicylate is a critical mobile signal for plant systemic acquired resistance 2007

      Park, S.-W., Kaiyomo, E., Kumar, D., Mosher, S.L., and Klessig, D.F.
      Science 318,  113-116
      Full text...
    • The search for the salicylic acid receptor led to discovery of the SAR signal receptor. 2008

      Kumar, D., and Klessig, D.F.
      Plant Signal Behav. 3,  691-692
      Full text...
    • CRT1, an Arabidopsis ATPase that interacts with diverse resistance proteins and modulates disease resistance to turnip crinkle virus 2008

      Kang, H.G., Kuhl, J.C., Kachroo, P., and Klessig, D.F.
      Cell Host & Microbe 3,  48-57
      Full text...
    • HRT-mediated hypersensitive response and resistance to Turnip crinkle virus in Arabidopsis does not require the function of TIP, the presumed guardee protein 2008

      Jeong, R.D., Chandra-Shekara, A.C., Kachroo, A., Klessig, D.F., and Kachroo, P.
      Mol. Plant Microbe Interact. 21,  1316-1324
      Full text...
    • The involvement of the Arabidopsis CRT1 ATPase family in disease resistance protein-mediated signaling 2008

      Kang, H.G., and Klessig, D.F.
      Plant Signal Behav. 3,  689-690
      Full text...
    • Inactive methyl indole-3-acetic acid ester can be hydrolyzed and activated by several esterases belonging to the AtMES esterase family of Arabidopsis 2008

      Yang, Y., Xu, R., Ma, C.J., Vlot, A.C., Klessig, D.F., and Pichersky, E.
      Plant Physiology 147,  1034-1045
      Full text...
    • The Arabidopsis gain-of-function mutant ssi4 requires RAR1 and SGT1b differentially for defense activation and morphological alterations. 2008

      Zhou, F.S., Mosher, S., Tian, M.Y., Sassi, G., Parker, J., and Klessig, D.F.
      Mol. Plant Microbe Interact. 21,  40-49
      Full text...
    • Validation of RNAi Silencing Specificity Using Synthetic Genes: Salicylic Acid-binding Protein 2 is Required for Innate Immunity in Plants 2006

      Kumar, D., Gustafsson, C., and Klessig, D.F.
      Plant J. 45,  863-868
      Full text...
    • The Chimeric Arabidopsis CYCLIC NUCLEOTIDE-GATED ION CHANNEL11/12 Activates Multiple Pathogen Resistance Responses 2006

      Yoshioka, K., Moeder, W., Kang, H.-G., Kachroo, P., Masmoudi, K., Berkowitz, G., and Klessig, D.F.
      Plant Cell 18,  747-763.
      Full text...
    • Crystal structure and biochemical studies identify tobacco SABP2 as a methylsalicylate esterase and further implicate it in plant innate immunity 2005

      Forouhar, F., Yang, Y., Kumar, D., Chen, Y., Fridman, E., Park, S.W., Chiang, Y., Acton, T.B., Montelione, G.T., Pichersky, E., Klessig, D.F., and Tong, L.
      P. Natl. Acad. Sci. U S A 102,  1773-1778
      Full text...
    • Silencing of the Mitogen-activated Protein Kinase MPK6 Compromises Disease Resistance in Arabidopsis 2004

      Menke, F.L.H., van Pelt, J.A., Pieterse, C.M.J., and Klessig, D.F.
      Plant Cell 16,  897-907
      Full text...
    • Interconnection between methyl salicylate and lipid-based long-distance signaling during systemic acquired resistance in Arabidopsis and tobacco 2001

      Liu, P.-P., von Dahl, C. C., Park, S.-W., and Klessig, D. F.
      Plant Physiol. 155,  1762-1768
      Full text...
    • Double-Stranded RNA-Binding Protein 4 Is Required for Resistance Signaling against Viral and Bacterial Pathogens 2013

      Zhu, S.F., Jeong, R.D., Lim, G.H., Yu, K.S., Wang, C.X., Chandra-Shekara, A.C., Navarre, D., Klessig, D.F., Kachroo, A., and Kachroo, P.
      Cell Reports 4,  1168-1184
      Full text...
    • Potato tuber herbivory increases resistance to aboveground lepidopteran herbivores 2016

      Kumar, P., Vargas Ortiz, E., Garrido, E., Poveda, K., and Jander, G.
      Oecologia 182(1),  177-87
      Full text...
    • Detoxification of host plant’s chemical defense rather than its anti-predator co-option drives b-glucosidase-mediated lepidopteran counter adaptation 2015

      Poreddy, S., Mitra, M., Schöttner, M., Chandran, J., Schneider, B., Baldwin, I.T., Kumar, P. and Pandit, S. S.
      Nature Commun 6:8525,  doi: 10.1038/ncomms9525
      Full text...
    • Pyridine-type alkaloid composition affects bacterial community composition of floral nectar 2015

      Aizenberg Gershtein, Y., Izhaki, I., Santhanam, R., Kumar, P., Baldwin, I. T. and Halpern, M.
      Scientific Reports 5:11536,  DOi: 10.1038/srep11536
      Full text...
    • Difference in nicotine metabolism of two herbivores of Nicotiana attenuata renders them differentially susceptible to a common native predator 2014

      Kumar, P., Schoettner, M., Pandit, S. S., and Baldwin, I. T.
      PLOS One 9 (4),  e95982
      Full text...
    • A natural history driven, plant mediated RNAi based study reveals CYP6B46’s role in a nicotine-mediated anti-predator herbivore defense 2013

      Kumar, P., Pandit, S. S., Steppuhn, A., and Baldwin, I. T.
      Proc Natl Acad Sci USA 111,  1245-1252
      Full text...
    • Tobacco Rattle Virus vector: A rapid and transient means of silencing Manduca sexta genes by plant mediated RNA interference 2012

      Kumar, P., Pandit, S. S., Baldwin, I. T.
      PLOS One 7 (2),  e31347
      Full text...
    • Spatial and temporal expression patterns of diverse Pin-II genes in Capsicum annuum Linn 2009

      Tamhane, V. A., Giri, A. P., Kumar, P., Gupta, V. S.
      Gene 442:1-2,  88-90
      Full text...
    • Hornworts, an overlooked window into carbon-concentrating mechanism 2017

      Li, F.-W., J.C. Villarreal, P. Szovenyi
      Trends in Plant Science in press
    • Boechera (Brassicaceae) Microsatellite Database: an online portal for species identification and hybrid relationship resolution 2017

      Li, F.-W., C.A. Rushworth, J.B. Beck, M.D. Windham
      Database in press
      Full text...
    • The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2 2017

      Rockwell, N.C., S.S. Martin, F.-W. Li, S. Mathews, J.C. Lagarias
      New Phytologist in press
    • Genes translocated into the plastid inverted repeat show decelerated substitution rates and elevated GC content 2016

      Li, F.-W., L.-Y. Kuo, K.M. Pryer, C.J. Rothfels
      Genome Biology and Evolution 8,  2452-2458
      Full text...
    • Asplenium pifongiae (Aspleniaceae: Polypodiales), a new species from Taiwan 2016

      Li, F.-W., L.Y. Kuo, Y.H. Chang, T.C. Hsu, H.C. Hung, W.L. Chiou, C.J. Rothfels, Y.M. Huang
      Systematic Botany 41,  24-31
      Full text...
    • Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis 2016

      Hsu, P.Y., L. Calviello, H.-.Y. L. Wu*, F.-W. Li*, C.J. Rothfels, U. Ohler, P.N. Benfey.
      Proceedings of the National Academy of Sciences USA 113,  E7126-E7135
    • Microbial-type terpene synthase genes occur widely in nonseed land plants, but not in seed plants 2016

      Jia, Q., G. Li, T.G. Köllner, J. Fu, X. Chen, W. Xiong, B.J. Crandall-Stotler, J.L. Bowman, D.J. Weston, Y. Zhang, L. Chen, Y. Xie, F.-W. Li, C.J. Rothfels, A. Larsson, S.W. Graham, D.W. Stevenson, G.K.-S. Wong, J. Gershenzon, F. Chen.
      Proceedings of the National Academy of Sciences USA 113,  12328-12333
    • Next-generation polyploid phylogenetics: Rapid resolution of hybrid polyploid complexes using PacBio single-molecule sequencing 2016

      Rothfels, C.J., K.M. Pryer, F.-W. Li
      New Phytologist 213,  413-429
    • Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR): a regulator of ABA responses unique to basal land plants, required for desiccation tolerance 2016

      Stevenson, S.R., Y. Kamisugi, J. Schmutz, J.W. Jenkins, J. Grimwood, W. Muchero, G.A. Tuskan, S.A. Rensing, D. Lang, R. Reski, C. Trinh, M. Melkonian, C.J. Rothfels, F.-W. Li, A. Larsson, G.K.S. Wong, T. Edwards, A.C. Cuming.
      Plant Cell 28,  1310–1327
    • Maidenhair ferns, Adiantum, are indeed monophyletic, and sister to to the shoestring ferns, vittaroids (Pteridaceae) 2016

      Pryer, K.M., L. Huiet, F.-W. Li, C.J. Rothfels, E. Schuettpelz
      Systematic Botany 41,  14-23
    • A community-derived classification for extant lycophytes and ferns 2016

      The Pteridophyte Phylogeny Group.
      Journal of Systematics and Evolution 54,  563-603
    • Phytochrome diversity in green plants and the origin of canonical plant phytochromes 2015

      Li, F.-W., M. Melkonian, C.J. Rothfels, J.C. Villareal, D. Stevenson, S.W. Graham, G.K.-S. Wong, K.M. Pryer, S. Mathews
      Nature Communications 6,  7852
    • The origin and evolution of phototropins in plants 2015

      Li, F.-W., C.J. Rothfels, M. Melkonian, J.C. Villarreal, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, S. Mathews, and K.M. Pryer
      Frontiers in Plant Science 6,  637
    • Evolutionary aspects of plant photoreceptors 2015

      Li, F.-W., S. Mathews
      Journal of Plant Research 129,  115-122
    • Searching for diamonds in the apomictic rough: A case study involving Boechera lignifera (Brassicaceae). 2015

      Windham, M.D., J.B. Beck, F.-W. Li, A. Allphin, J.G. Carman, C.A. Rushworth, E.M. Sigel, P.J. Alexander, C.D. Bailey, I.A. Al-Shehbaz
      Systematic Botany 40,  1031-1044
    • An exploration into fern genome space 2015

      Wolf, P.G., E.B. Sessa, D.B. Marchant, F.-W. Li, C.J. Rothfels, E.M. Sigel, M.A. Gitzendanner, C.J. Visger, J.A. Banks, D.E. Soltis, P.S. Soltis, K.M. Pryer, and J.P. Der
      Genome Biology and Evolution 7,  2533-2544
    • The evolutionary history of ferns inferred from 25 single-copy nuclear genes 2015

      Rothfels C.J., F.-W. Li, E.M Sigel., L. Huiet, A. Larsson, D.O. Burge, M. Ruhsam, M. Deyholos, D. Soltis, N. Stewart, S. Shaw, L.M. Pokorny, T. Chen, C. dePamphilis, L. DeGironimo, D.W. Stevenson, S.W. Graham, G.K.-S. Wong, and K.M. Pryer
      American Journal of Botany 102,  1089-1107
    • Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns 2014

      Li, F.-W., J.C. Villarreal, S. Kelly, C.J. Rothfels, M. Melkonian, E. Frangedakis, M. Ruhsam, E. M. Sigel, J.P. Der, J. Pittermann, D.O. Burge, L. Pokorny, A. Larsson, T. Chen, S. Weststrand, P. Thomas, E. Carpenter, Y. Zhang, Z. Tian, L. Chen, Z. Yan, Y. Zhu, X. Sun, J. Wang, D.W. Stevenson, B.J. Crandall-Stotler, A.J. Shaw, M.K. Deyholos, D.E. Soltis, S.W. Graham, M.D. Windham, J.A. Langdale, G.K.S. Wong, S. Mathews & K.M. Pryer
      Proceedings of the National Academy of Sciences USA, 111,  6672-6677
    • Crowdfunding the Azolla fern genome project: a grassroots approach 2014

      Li, F.-W., K.M. Pryer
      GigaScience 3,  16
    • Between two fern genomes 2014

      Sessa, E.B., J.A. Banks, M.S. Barker, J.P. Der, A.M. Duffy, S.W. Graham, M. Hasebe, J. Langdale, F.-W. Li, D.B. Marchant, K.M. Pryer, C.J. Rothfels, S.J. Roux, M.L. Salmi, E.M. Sigel, D.E. Soltis, P.S. Soltis, D.W. Stevenson, P.G. Wolf
      GigaScience 3,  15
    • The hybrid origin of Adiantum meishanianum (Pteridaceae): a rare and endemic species in Taiwan 2014

      Zhang, W.Y., L.Y. Kuo, F.-W. Li, C.N. Wang, W.L. Chiou
      Systematic Botany 39,  1034-1041
    • Transcriptome-mining for fern single-copy nuclear regions 2013

      Rothfels, C.J., A. Larsson, F.-W. Li, E.M. Sigel, L. Huiet, D.O. Burge, M. Ruhsam, S. Graham, D. Stevenson, G.K.S. Wong, P. Korall, K.M. Pryer
      PLoS One 8,  e76957
    • Gaga, a new genus segregated from Cheilanthes (Pteridaceae) 2012

      Li, F.-W., K.M. Pryer, M.D. Windham
      Systematic Botany 37,  845-860
    • rbcL and matK earn two thumbs up as the core DNA barcode for ferns 2011

      Li, F.-W., L.Y. Kuo, C.J. Rothfels, A. Ebihara, W.L. Chiou, M.D. Windham, K.M. Pryer
      PLoS One 6,  e26597
    • Book review: Knapp, Ralf. 2011. Ferns and Fern Allies of Taiwan 2011

      Li, F.-W.
      Taxon 60,  1233-1234
    • The first insight into fern matK phylogeny 2011

      Kuo*, L.Y., F.-W. Li*, W.L. Chiou, C.N. Wang.
      Molecular Phylogenetics and Evolution 59: 556-566 59,  556-566
    • Tissue-Direct PCR, a rapid and extraction-free method for barcoding of ferns 2010

      Li*, F.-W., L.Y. Kuo*, Y.M. Huang, W.L. Chiou, C.N. Wang
      Molecular Ecology Resources 10,  92-95
    • Identifying a mysterious aquatic fern gametophyte 2009

      Li, F.-W., B.C. Tan, V. Buchbender, R.C. Moran, G. Rouhan, C.N. Wang, D. Quandt
      Plant Systematics and Evolution 281,  77-86
    • Tomato receptor FLAGELLIN-SENSING 3 binds flgII-28 and activates the plant immune system. 2016

      Hind S. R., S. R. Strickler, P. C. Boyle, D. M. Dunham, Z. Bao, I. M. O'Doherty, J. A. Baccile, J. S. Hoki, E. G. Viox, C. R. Clarke, B. A. Vinatzer, F. C. Schroeder and G. B. Martin
      Nature Plants 2,  16128
      Full text...
    • Detecting N-myristoylation and S-acylation of host and pathogen proteins in plants using click chemistry. 2016

      Boyle, P. C., S. Schwizer, S. R. Hind, C. M. Kraus, S. de la Torre Diaz, B. He and G. B. Martin
      Plant Methods 12:38
      Full text...
    • iTAK: a program for genome-wide prediction and classification of plant transcription factors, transcriptional regulators, and protein kinases. 2016

      Zheng, Y., C. Jiao, H. Sun, H. G. Rosli, M. A. Pombo, P. Zhang, M. Banf, X. Dai, G. B. Martin, J. J. Giovannoni, P. X. Zhao, S. Y. Rhee and Z. Fei
      Molecular Plant 16,  30223-4
      Full text...
    • High-throughput CRISPR vector construction and generation of tomato hairy roots for the characterization of DNA modifications. 2016

      Jacobs, T. B. and G. B. Martin
      Journal of Visualized Experiments 110,  e53843
      Full text...
    • A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein. 2016

      Worley, J. N., Pombo, M. A., Zheng, Y., Dunham, D. M., Myers, C. R., Fei, Z., Martin, G.
      BMC Genomics 10.1186,  s12864-016-2534-4
      Full text...
    • Natural variation in tomato reveals differences in the recognition of AvrPto and AvrPtoB effectors from Pseudomonas syringae. 2016

      Kraus, C. M., Munkvold, K. R., Martin, G. B.
      Molecular Plant 10.1016,  j.molp.2016.03.001
      Full text...
    • Identification of a candidate gene in Solanum habrochaites for resistance to a race 1 strain of Pseudomonas syringae pv. tomato. 2015

      Bao, Z., Meng, F., Strickler, S. R., Dunham, D. M., Munkvold, K. R., Martin, G. B.
      The Plant Genome 10.3835,  plantgenome2015.02.0006
      Full text...
    • Pseudomonas syringae pv. tomato DC3000 type III secretion effector polymutants reveal an interplay between HopAD1 and AvrPtoB. 2015

      Wei H. L., Chakravarthy, S., Mathieu, J., Helmann, T. C., Stodghill, P., Swingle, B., Martin, G. B., Collmer, A.
      Cell Host & Microbe 10.1016,  j.chom.2015.05.007
      Full text...
    • Greasy tactics in the plant–pathogen molecular arms race. 2015

      Boyle, P.C., and Martin, G.B.
      Journal of Experimental Botany 10.1093,  jxb/erv059
      Full text...
    • The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics. 2015

      Fernandez-Pozo, N., Rosli, H.G., Martin, G.B., and Mueller, L.A.
      Molecular Plant 3,  486-488
      Full text...
    • Pto kinase binds two domains of AvrPtoB and its proximity to the effector E3 ligase determines if it evades degradation and activates plant immunity. 2014

      Mathieu, J., Schwizer, S., Martin, G.B.
      PLoS Pathogens 10,  e1004227
      Full text...
    • Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives. 2014

      Strickler, S.R., Bombarely, A., Munkvold, J.D., Menda, N., Martin, G.B., and Mueller, L.A.
      PeerJ PrePrints 2,  e377v1https://peerj.com/preprints/377v1/
    • Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins. 2014

      Pombo, M.A., Zheng, Y., Fernandez-Pozo, N., Dunham, V., Fei, Z., and Martin, G.B.
      Genome Biology 15,  492
      Full text...
    • Nonhost Resistance of Tomato to the Bean Pathogen Pseudomonas syringae pv. syringae B728a Is Due to a Defective E3 Ubiquitin Ligase Domain in AvrPtoBB728a. 2013

      Chien, C.F., Mathieu, J., Hsu, C.H., Boyle, P., Martin, G.B., and Lin, N.C.
      Molecular Plant-Microbe Interactions 26,  387-397
      Full text...
    • Allelic variation in two distinct Pseudomonas syringae flagellin epitopes modulates the strength of plant immune responses but not bacterial motility. 2013

      Clarke, C.R., Chinchilla, D., Hind, S.R., Taguchi, F., Miki, R., Ichinose, Y., Martin, G.B., Leman, S., Felix, G., and Vinatzer, B.A.
      New Phytologist 200,  847-860
      Full text...
    • The Tomato Calcium Sensor Cbl10 and Its Interacting Protein Kinase Cipk6 Define a Signaling Pathway in Plant Immunity. 2013

      de la Torre, F., Gutierrez-Beltran, E., Pareja-Jaime, Y., Chakravarthy, S., Martin, G.B., and del Pozo, O.
      Plant Cell 25,  2748-2764
      Full text...
    • Thymoquinone causes multiple effects, including cell death, on dividing plant cells. 2013

      Hassanien, S.E., Ramadan, A.M., Azeiz, A.Z.A., Mohammed, R.A., Hassan, S.M., Shokry, A.M., Atef, A., Kamal, K.B.H., Rabah, S., Sabir, J.S.M., Abuzinadah, O.A., El-Domyati, F.M., Martin, G.B., and Bahieldin, A.
      Comptes Rendus Biologies 336,  546-556
      Full text...
    • Transcriptomics-based screen for genes induced by flagellin and repressed by pathogen effectors identifies a cell wall-associated kinase involved in plant immunity. 2013

      Rosli, H. G., Zheng, Y., Pombo, M. A., Zhong, S., Bombarely, A., Fei, Z., Collmer, A., and Martin, G.B.
      Genome Biology 14,  R139
      Full text...
    • Salmonella colonization activates the plant immune system and benefits from association with plant pathogenic bacteria. 2013

      Meng, F., Altier, C., and Martin, G.B.
      Environmental Microbiology 15,  2418-2430
      Full text...
    • The Tomato Fni3 Lysine-63-Specific Ubiquitin-Conjugating Enzyme and Suv Ubiquitin E2 Variant Positively Regulate Plant Immunity. 2013

      Mural, R.V., Liu, Y., Rosebrock, T.R., Brady, J.J., Hamera, S., Connor, R.A., Martin, G.B., and Zeng, L.R.
      Plant Cell 25,  3615-3631
      Full text...
    • Two leucines in the N-terminal MAPK-docking site of tomato SlMKK2 are critical for interaction with a downstream MAPK to elicit programmed cell death associated with plant immunity. 2013

      Oh, C.S., Hwang, J., Choi, M.S., Kang, B.C., and Martin, G.B.
      FEBS Letters 587,  1460-1465
      Full text...
    • Plant programmed cell death caused by an autoactive form of Prf is suppressed by co-expression of the Prf LRR domain. 2012

      Du, X.R., Miao, M., Ma, X.R., Liu, Y.S., Kuhl, J.C., Martin, G.B., and Xiao, F.M.
      Molecular Plant 5,  1058-1067
      Full text...
    • A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research. 2012

      Bombarely, A., Rosli, H.G., Vrebalov, J., Moffett, P., Mueller, L.A., and Martin, G.B.
      Molecular Plant-Microbe Interactions 25,  1523-1530
      Full text...
    • The beta-subunit of the SnRK1 complex is phosphorylated by the plant cell death suppressor Adi3. 2012

      Avila, J., Gregory, O.G., Su, D.Y., Deeter, T.A., Chen, S.X., Silva-Sanchez, C., Xu, S.L., Martin, G.B., and Devarenne, T.P.
      Plant Physiology 159,  1277-1290
      Full text...
    • Type III secretion and effectors shape the survival and growth pattern of Pseudomonas syringae on leaf surfaces. 2012

      Lee, J., Teitzel, G.M., Munkvold, K., del Pozo, O., Martin, G.B., Michelmore, R.W., and Greenberg, J.T.
      Plant Physiology 158,  1803-1818
      Full text...
    • Suppression and Activation of the Plant Immune System by Pseudomonas syringae Effectors AvrPto and AvrPtoB. 2012

      Martin, G.
      Effectors in Plant-Microbe Interactions 0: Wiley-Blackwell,  121-154
      Full text...
    • Molecular Mechanisms Involved in the Interaction Between Tomato and Pseudomonas syringae pv. tomato. 2012

      Velasquez, A.C., and Martin, G.B.
      Molecular Plant Immunity. 0: Wiley-Blackwell,  187-209
      Full text...
    • A tomato LysM receptor-like kinase promotes immunity and its kinase activity is inhibited by AvrPtoB. 2012

      Zeng L., Velasquez, A.C., Munkvold, K.R., Zhang, J., and Martin, G.B.
      The Plant Journal 69,  92-103
      Full text...
    • Tomato 14-3-3 protein TFT7 interacts with a MAP kinase kinase to regulate immunity-associated programmed cell death mediated by diverse disease resistance proteins. 2011

      Oh, C.S., and Martin, G.B.
      Journal of Biological Chemistry 286,  14129-14136
      Full text...
    • Effector-triggered immunity mediated by the Pto kinase. 2011

      Oh, C.S., and Martin, G.B.
      Trends in Plant Science 16,  132-140
      Full text...
    • Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae. 2011

      Cunnac, S., Chakravarthy, S., Kvitko, B.H., Russell, A.B., Martin, G.B., and Collmer, A.
      Proceedings of the National Academy of Sciences 108,  2975-2980
      Full text...
    • Structural analysis of Pseudomonas syringae AvrPtoB bound to host BAK1 reveals two similar kinase-interacting domains in a type III effector. 2011

      Cheng, W., Munkvold, K.R., Gao, H., Mathieu, J., Schwizer, S., Wang, S., Yan, Y.B., Wang, J., Martin, G.B., and Chai, J.
      Cell Host Microbe 10,  616-626
      Full text...
    • Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco. 2010

      Kang, H.G., Oh, C.S., Sato, M., Katagiri, F., Glazebrook, J., Takahashi, H., Kachroo, P., Martin, G.B., and Klessig, D.F.
      Plant Cell 22,  918-936
      Full text...
    • Two virulence determinants of type III effector AvrPto are functionally conserved in diverse Pseudomonas syringae pathovars. 2010

      Nguyen, H.P., Yeam, I., Angot, A., and Martin, G.B.
      New Phytologist 187,  969-982
      Full text...
    • Methods to study PAMP-triggered immunity using tomato and Nicotiana benthamiana. 2010

      Nguyen, H.P., Chakravarthy, S., Velasquez, A.C., McLane, H.L., Zeng, L., Nakayashiki, H., Park, D.H., Collmer, A., and Martin, G.B.
      Molecular Plant Microbe Interactions 23,  991-999
      Full text...
    • Identification of Nicotiana benthamiana genes involved in pathogen-associated molecular pattern-triggered immunity. 2010

      Chakravarthy, S., Velasquez, A.C., Ekengren, S.K., Collmer, A., and Martin, G.B.
      Molecular Plant Microbe Interactions 23,  715-726
      Full text...
    • A secreted effector protein (SNE1) from Phytophthora infestans is a broadly acting suppressor of programmed cell death. 2010

      Kelley, B.S., Lee, S.J., Damasceno, C.M.B., Chakravarthy, S., Kim, B.D., Martin, G.B., and Rose, J.K.C.
      Plant J. 62,  357-366
      Full text...
    • Tomato 14-3-3 protein 7 positively regulates immunity-associated programmed cell death by enhancing protein abundance and signaling ability of MAPKKK {alpha}. 2010

      Oh, C.S., Pedley, K.F., and Martin, G.B.
      Plant Cell 22,  260-272
      Full text...
    • Phosphorylation of the Pseudomonas syringae effector AvrPto is required for FLS2/BAK1-independent virulence activity and recognition by tobacco. 2010

      Yeam, I., Nguyen, H.P., and Martin, G.B.
      Plant Journal 61,  16-24
      Full text...
    • Virus-induced gene silencing (VIGS) in Nicotiana benthamiana and tomato. 2009

      Velasquez, A.C., Chakravarthy, S., and Martin, G.B.
      J. Vis. Exp. 28,  1292
      Full text...
    • Assay for pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) in plants. 2009

      Chakravarthy, S., Velasquez, A.C., and Martin, G.B.
      Journal of Visualized Experiments 31,  1442
      Full text...
    • Deletions in the repertoire ofPseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors. 2009

      Kvitko, B.H., Park, D.H., Velasquez, A.C., Wei, C.F., Russell, A.B., Martin, G.B., Schneider, D.J., and Collmer, A.
      PLoS Pathogens 5,  e1000388
      Full text...
    • Crystal structure of the complex between Pseudomonas effector AvrPtoB and the tomato Pto kinase reveals both a shared and a unique interface compared with AvrPto-Pto. 2009

      Dong, J., Xiao, F.M., Fan, F.X., Gu, L.C., Cang, H.X., Martin, G.B., and Chai, J.J.
      Plant Cell 21,  1846-1859
      Full text...
    • Bacterial effectors target the common signaling partner BAK1 to disrupt multiple MAMP receptor-signaling complexes and impede plant immunity. 2008

      Shan, L.B., He, P., Li, J.M., Heese, A., Peck, S.C., Nurnberger, T., Martin, G.B., and Sheen, J.
      Cell Host & Microbe 4,  17-27
      Full text...
    • A bacterial E3 ubiquitin ligase targets a host protein kinase to disrupt plant immunity. 2007

      Rosebrock, T. R., Zeng, L., Brady, J.J., Abramovitch, R.B., Xiao, F., and Martin, G.B.
      Nature 448,  370-374
      Full text...
    • A Bacterial Inhibitor of Host Programmed Cell Death Defenses Is an E3 Ubiquitin Ligase. 2006

      Janjusevic, R., Abramovitch, R.B., Martin, G,B, and Stebbins, C.E.
      Science 311,  222-226
      Full text...
    • Host-Mediated Phosphorylation of Type III Effector AvrPto Promotes Pseudomonas Virulence and Avirulence in Tomato. 2006

      Anderson, J. C., Pascuzzi, P.E., Xiao, F., Sessa, G., and Martin, G.B.
      Plant Cell 18,  502-514
      Full text...
    • Type III Effector AvrPtoB Requires Intrinsic E3 Ubiquitin Ligase to Suppress Plant Cell Death and Immunity. 2006

      Abramovitch, R. B., Janjusevic, R., Stebbins, C.E., and Martin, G.B.
      Proceedings of the National Academy of Sciences U S A 103,  2851-2856
      Full text...
    • Bacterial elicitation and evasion of plant innate immunity. 2006

      Abramovitch, R. B., Anderson, J.C., and Martin, G.B.
      Nature Reviews Molecular Cell Biology 7,  601-611
      Full text...
    • Specific bacterial suppressors of MAMP signaling upstream of MAPKKK in Arabidopsis innate immunity. 2006

      He, P., Shan, L., Lin, N.-C., Martin, G.B., Kemmerling, B., Nurnberger, T., and Sheen, J.
      Cell 125,  563-575
      Full text...
    • MAPKKKα is a Positive Regulator of Cell Death Associated with both Plant Immunity and Disease. 2004

      del Pozo, O., Pedley, K.F., and Martin, G.B.
      EMBO Journal 23,  3072-3082
      Full text...
    • Molecular Basis of Pto-mediated Resistance to Bacterial Speck Disease in Tomato. 2003

      Pedley, K. F., and Martin, G.B.
      Annual Reviews of Phytopathology 41,  215-243
      Full text...
    • Understanding the Functions of Plant Disease Resistance Proteins. 2003

      Martin, G.B., Bogdanove, A.J., and Sessa, G.
      Annual Review of Plant Biology 54,  23-61
      Full text...
    • Pseudomonas Type III Effector AvrPtoB Induces Plant Disease Susceptibility by Inhibition of Host Programmed Cell Death. 2003

      Abramovitch, R. B., Kim, Y.J., Chen, S.R., Dickman, M.B., and Martin, G.B.
      EMBO Journal 22,  60-69
      Full text...
    • Two highly distinct Pseudomonaseffector proteins interact with the Pto kinase and activate plant immunity. 2002

      Kim, Y.-J., Lin, N.-C., and Martin, G.B.
      Cell 109,  589-598
      Full text...
    • Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto. 2001

      Riely, B., and Martin, G.B.
      Proceedings of the National Academy of Sciences U S A 98,  2059-2064
      Full text...
    • Thr38 and Ser198 are Pto Autophosphorylation Sites Required for the AvrPto-Pto-mediated Hypersensitive Response. 2000

      Sessa, G., D’Ascenzo, M., and Martin, G.B.
      EMBO Journal 19,  2257-2269
      Full text...
    • Recognition Specificity for the Bacterial Avirulence Protein AvrPto is Determined by Thr-204 in the Activation Loop of the Tomato Pto Kinase. 1998

      Frederick, R., Thilmony, R.L., Sessa, G., and Martin, G.B.
      Molecular Cell 2,  241-245
      Full text...
    • Initiation of Plant Disease Resistance by Physical Interaction of AvrPto and Pto Kinase. 1996

      Tang, X., Frederick, R., Halterman, D., Zhou, J., and Martin, G.B.
      Science 274,  2060-2063
      Full text...
    • The Tomato Gene Pti1 Encodes a Serine/threonine Kinase That is Phosphorylated by Pto and is Involved in the Hypersensitive Response. 1995

      Zhou, J., Loh, Y.T., and Martin, G.B.
      Cell 83,  925-935
      Full text...
    • A Member of the Tomato Pto Gene Family Confers Sensitivity to Fenthion Resulting in Rapid Cell Death. 1994

      Martin, G. B., Frary, A., Wu, T., Brommonschenkel, S., Chunwongse, J., Earle, E.D., and Tanksley, S.D.
      Plant Cell 6,  1543-1552
      Full text...
    • Map-based Cloning of a Protein Kinase Gene Conferring Disease Resistance in Tomato. 1993

      Martin, G. B., Brommonschenkel, S.H., Chunwongse, J., Frary, A., Ganal, M.W., Spivey, R., Wu, T., Earle, E.D., and Tanksley, S.D.
      Science 262,  1432-1436
      Full text...
    • An acorn squash (Cucurbita pepo ssp. ovifera) fruit and seed transcriptome as a resource for the study of fruit traits in Cucurbita 2015

      Wyatt, L.E., Strickler, S.R., Mueller, L.A., and Mazourek, M.
      Horticulture Research , 14070,  14070
      Full text...
    • Differential regulation of caffeine metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) 2015

      Perrois, C., Strickler, S.R., Mathieu, G., Lepelley, M., Bedon, L., Michaux, S., Husson, J., Mueller, L., and Privat, I.
      Planta 241(1),  179-191
      Full text...
    • The Sol Genomics Network (SGN)—from genotype to phenotype to breeding 2014

      Fernandez-Pozo, N., Menda, N., Edwards, J.D., Saha, S., Tecle, I.Y., Strickler, S.R., Bombarely, A., Fisher-York, T., Pujar, A., Foerster, H., Yan, A., and Mueller, L.A.
      Nucl. Acids Res. 43 (D1),  D1036-D1041
      Full text...
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases 2014

      Caspi, R., Altman, T., Billington, R., Dreher, K., Foerster, H., Fulcher, C.A., Holland, T.A., Keseler, I.M., Kothari, A., Kubo, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Ong, Q., Paley, S., Subhraveti, P., Weaver, D.S., Weerasinghe, D., Zhang, P.F., and Karp, P.D.
      Nucleic Acids Research 42,  D459-D471.
      Full text...
    • The SGN VIGS tool: user-friendly software to design virus-induced gene silencing (VIGS) constructs for functional genomics 2015

      Fernandez-Pozo, N., Rosli, H.G., Martin, G.B., and Mueller, L.A.
      Mol. Plant 3,  486-488
      Full text...
    • Comparative genomics and phylogenetic discordance of cultivated tomato and close wild relatives 2014

      Strickler, S.R., Bombarely, A., Munkvold, J.D., Menda, N., Martin, G.B., and Mueller, L.A.
      PeerJ PrePrints 2,  e377v1
      Full text...
    • A draft genome sequence of Nicotiana benthamiana to enhance molecular plant-microbe biology research. 2012

      Bombarely, A., Rosli, H.G., Vrebalov, J., Moffett, P., Mueller, L.A., and Martin, G.B.
      Mol. Plant-Microbe Interact. 25,  1523-1530
      Full text...
    • Linking the potato genome to the conserved ortholog set (COS) markers 2013

      Lindqvist-Kreuze, H., Cho, K., Portal, L., Rodriguez, F., Simon, R., Mueller, L.A., Spooner, D.M., and Bonierbale, M.
      BMC Genetics 14,  51
      Full text...
    • Advances in tomato research in the post-genome era 2013

      Menda, N., Strickler, S.R., and Mueller, L.A.
      Plant Biotechnology 30,  243-256
      Full text...
    • From manual curation to visualization of gene families and networks across Solanaceae plant species 2013

      Pujar, A., Menda, N., Bombarely, A., Edwards, J.D., Strickler, S.R., and Mueller, L.A.
      Database : The Journal of Biological Databases and Curation (Oxford) 2013,  bat028
      Full text...
    • The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions 2012

      Guo, S., Zhang, J., Sun, H., Salse, J., Lucas, W., Zhang, H., Zheng, Y., Mao, L., Ren, Y., Wang, Z., Min, J., Guo, X., Murat, F., Ham, B., Zhang, Z., Gao, S., Huang, M., Xu, Y., Zhong, S., Bombarely, A., Mueller, L., Zhao, H., He, H., Zhang, Y., Zhang, Z., Huang, S., Tan, T., Pang, E., Lin, K., Hu, Q., Kuang, H., Ni, P., Wang, B., Liu, J., Kou, Q., Hou, W., Zou, X., Jiang, J., Gong, G., Klee, K., Schoof, H., Huang, Y., Hu, X., Dong, S., Liang, D., Wang, J., Wu, K., Xia, Y., Zhao, X., Zheng, Z., Xing, M., Liang, X., Huang, B., Lv, T., Wang, J., Yin, Y., Yi, H., Li, R., Wu, M., Levi, A., Zhang, X., Giovannoni, J., Wang, J., Li, Y., Fei, Z., and Xu, Y.
      Nature Genetics 45,  51-58
      Full text...
    • Molecular Phylogeny of Daucus (Apiaceae) 2013

      Spooner, D., Rojas, P., Bonierbale, M., Mueller, L.A., Srivastav, M., Senalik, D., and Simon, P.
      Systematic Botany 38,  850-857
      Full text...
    • The tomato kinome and the TOKN ORFeome: resources for the study of kinases and signal transduction in tomato and Solanaceae. 2014

      Singh, D.K., Calviño, M., Brauer, E.K.*, Fernandez-Pozo, N.*, Strickler, S., Yalamanchili, R., Suzuki, H., Aoki, K., Shibata, D., Stratmann, J.W., Popescu, G.V., Mueller, L., and Popescu, S.C. *co-third authors
      Mol. Plant Microbe Interact. 27,  7-17. Article featured as an MPMI Editor’s Pick: Kinases and Signal Transduction in Tomato and Solanaceae Species, 16 January 2014. REU students Ann Guggisberg and Jade Newsome are acknowledged for their contributions
      Full text...
    • Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective 2012

      Bombarely, A., Edwards, K.D., Sanchez-Tamburrino, J., and Mueller, L.A.
      BMC Genomics 13,  406
      Full text...
    • The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases 2012

      Caspi, R., Altman, T., Dreher, K., Fulcher, C.A., Subhraveti, P., Keseler, I.M., Kothari, A., Krummenacker, M., Latendresse, M., Mueller, L.A., Ong, Q., Paley, S., Pujar, A., Shearer, A.G., Travers, M., Weerasinghe, D., Zhang, P.F., and Karp, P.D.
      Nucleic Acids Research 40,  D742-D753
      Full text...
    • Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota) 2012

      Cai, D.Y., Rodriguez, F., Teng, Y.W., Ane, C., Bonierbale, M., Mueller, L.A., and Spooner, D.M.
      BMC Evol. Biol. 12,  70
      Full text...
    • Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case 2012

      Lopez-Casado, G., Covey, P.A., Bedinger, P.A., Mueller, L.A., Thannhauser, T.W., Zhang, S., Fei, Z.J., Giovannoni, J.J., and Rose, J.K.C.
      Proteomics, 12,  761-774
      Full text...
    • Trait diversity and potential for selection indices based on variation among regionally adapted processing tomato germplasm 2012

      Merk, H.L., Yarnes, S.C., Van Deynze, A., Tong, N.K., Menda, N., Mueller, L.A., Mutschler, M.A., Loewen, S.A., Myers, J.R., and Francis, D.M.
      J. Am. Soc. Hortic. Sci. 137,  427-437
      Full text...
    • Designing a transcriptome next-generation sequencing project for a nonmodel plant species 2012

      Strickler, S.R., Bombarely, A., and Mueller, L.A.
      Am. J. Bot. 99,  257-266
      Full text...
    • The Tomato Genome Consortium. 2009. A snapshot of the emerging tomato genome sequence. 2009

      The Plant Genome 2,  78-92
      Full text...
    • The ‘PUCE CAFE’ project: the first 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits 2011

      Privat, I., Bardil, A., Gomez, A.B., Severac, D., Dantec, C., Fuentes, I., Mueller, L., Joet, T., Pot, D., Foucrier, S., Dussert, S., Leroy, T., Journot, L., de Kochko, A., Campa, C., Combes, M.C., Lashermes, P., and Bertrand, B.
      BMC Genomics 12,  5
      Full text...
    • The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data 2011

      Jung, S., Menda, N., Redmond, S., Buels, R.M., Friesen, M., Bendana, Y., Sanderson, L.A., Lapp, H., Lee, T., MacCallum, B., Bett, K.E., Cain, S., Clements, D., Mueller, L.A., and Main, D.
      Database: The Journal of Biological Databases and Curation ]2011],  bar051
      Full text...
    • The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl 2011

      Bombarely, A., Menda, N., Tecle, I.Y., Buels, R.M., Strickler, S., Fischer-York, T., Pujar, A., Leto, J., Gosselin, J., and Mueller, L.A.
      Nucleic Acids Res. 39,  D1149-1155
      Full text...
    • TobEA: an atlas of tobacco gene expression from seed to senescence 2010

      Edwards, K.D., Bombarely, A., Story, G.W., Allen, F., Mueller, L.A., Coates, S.A., and Jones, L.
      BMC Genomics 11,  142
      Full text...
    • Advances in Coffea genomics 2010

      De Kochko, A., Akaffou, S., Andrade, A.C., Campa, C., Crouzillat, D., Guyot, R., Hamon, P., Ming, R., Mueller, L.A., Poncet, V., Tranchant-Dubreuil, C., and Hamon, S.
      Advances in Botanical Research 53,  23-63
      Full text...
    • Analysis of Ultra Low Genome Conservation in Clostridium difficile 2010

      Scaria, J., Ponnala, L., Janvilisri, T., Yan, W.W., Mueller, L.A., and Chang, Y.F.
      PLoS ONE 5,  e15147
      Full text...
    • solQTL: a tool for QTL analysis, visualization and linking to genomes at SGN database 2010

      Tecle, I.Y., Menda, N., Buels, R.M., van der Knaap, E., and Mueller, L.A.
      BMC Bioinformatics 11,  525
      Full text...
    • Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants 2010

      Zhang, P.F., Dreher, K., Karthikeyan, A., Chi, A., Pujar, A., Caspi, R., Karp, P., Kirkup, V., Latendresse, M., Lee, C., Mueller, L.A., Muller, R., and Rhee, S.Y.
      Plant Physiology 153,  1479-1491
      Full text...
    • A dynamic interface for capsaicinoid systems biology 2009

      Mazourek, M., Pujar, A., Borovsky, Y., Paran, I., Mueller, L., and Jahn, M.M.
      Plant Physiology 150,  1806-1821
      Full text...
    • A community-based annotation framework for linking Solanaceae genomes with phenomes 2008

      Menda, N., Buels, R.M., Tecle, I., and Mueller, L.A.
      Plant Physiology 147,  1788-1799
      Full text...
    • Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the euasterid plant clade 2006

      Wu, F., Mueller, L.A., Crouzillat, D., Petiard, V., and Tanksley, S.D.
      Genetics 174,  1407-1420
      Full text...
    • EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot 2006

      Carlson, J.E., Leebens-Mack, J.H., Wall, P.K., Zahn, L.M., Mueller, L.A., Landherr, L.L., Hu, Y., Ilut, D.C., Arrington, J.M., Choirean, S., Becker, A., Field, D., Tanksley, S.D., Ma, H., and dePamphilis, C.W.
      Plant Mol. Biol. 62,  351-369
      Full text...
    • Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts 2005

      Lin, C., Mueller, L.A., Carthy, J.M., Crouzillat, D., Petiard, V., and Tanksley, S.D.
      Theor. Appl. Genet. 112(1),  114–130
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    • MetaCyc and AraCyc. Metabolic pathway databases for plant research 2005

      Zhang, P., Foerster, H., Tissier, C.P., Mueller, L., Paley, S., Karp, P.D., and Rhee, S.Y.
      Plant Physiology 138,  27-37
      Full text...
    • The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL) 2005

      Mueller, L. A., Tanksley, S.D., Giovannoni, J., Van Eck, J., Stack, S., Choi, D., Kim, B.D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop, G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N.K., Stiekema, W., Lindhout, P., Jesse, T., Lankhorst, R.K., Bouzayen, M., Shibata, D., Tabata, S., Granell, A., Botella, M.A., Giuliano, G., Frusciante, L., Causse, M., and Zamir, D.
      Comparative and Functional Genomics 6,  153-158
      Full text...
    • Querying and computing with BioCyc databases 2005

      Krummenacker, M., Paley, S.M., Mueller, L.A., Yan, T., and Karp, P.D.
      Bioinformatics 21,  3454-3455
      Full text...
    • Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments 2005

      Wang, Y., van der Hoeven, R.S., Nielsen, R., Mueller, L.A., and Tanksley, S.D.
      Theor. Appl. Genet. 6,  1-13
      Full text...
    • PatMatch: a program for finding patterns in peptide and nucleotide sequences 2005

      Yan, T., Yoo, D., Berardini, T.Z., Mueller, L.A., Weems, D.C., Weng, S., Cherry, J.M., Rhee, S.Y.
      Nucleic Acids Res. 33 (Web Server issue),  W262-266
      Full text...
    • Floral gene resources from basal angiosperms for comparative genomics research 2005

      Albert, V.A., Soltis, D.E., Carlson, J.E., Farmerie, W.G., Wall, P.K., Ilut, D.C., Solow, T.M., Mueller, L.A., Landherr, L.L., Hu, Y., Buzgo, M., Kim, S., Yoo, M.J., Frohlich, M.W., Perl-Treves, R., Schlarbaum, S.E., Bliss, B.J., Zhang, X., Tanksley, S.D., Oppenheimer, D.G., Soltis, P.S., Ma, H., DePamphilis, C.W., and Leebens-Mack, J.H.
      BMC Plant Biol. 5,  5
      Full text...
    • The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond 2005

      Mueller, L.A., Solow, T.H., Taylor, N., Skwarecki, B., Buels, R., Binns, J., Lin, C., Wright, M.H., Ahrens, R., Wang, Y., Herbst, E.V., Keyder, E.R., Menda, N., Zamir, D., and Tanksley, S.D.
      Plant Physiology 138,  1310-1317
      Full text...
    • Related Articles, Links Abstract Functional annotation of the Arabidopsis genome using controlled vocabularies 2004

      Berardini, T.Z., Mundodi, S., Reiser, L., Huala, E., Garcia-Hernandez, M., Zhang, P., Mueller, L.A., Yoon, J., Doyle, A., Lander, G., Moseyko, N., Yoo, D., Xu, I., Zoeckler, B., Montoya, M., Miller, N., Weems, D., and Rhee, S.Y.
      Plant Physiology 135,  745-55
      Full text...
    • MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes 2004

      Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L.A., Rhee, S.Y., and Stitt, M.
      Plant J. 37,  914-939
      Full text...
    • MetaCyc: a multiorganism database of metabolic pathways and enzymes 2004

      Krieger, C., Zhang, P., Mueller, L.A., Wang, A., Paley, S., Arnaud, M., Pick, J., Rhee, S., and Karp, P.
      Nucleic Acids Research 32, Database Issue,  438-442
      Full text...
    • AraCyc: An Arabidopsis thaliana biochemical pathway database 2003

      Mueller, L.A., Zhang, P., and Rhee, S.
      Plant Physiology 132,  453-460
      Full text...
    • A sequence based map of Arabidopsis genes with mutant phenotypes 2003

      Meinke, D.W., Meinke, L.K., Showalter, T.C., Schissel, A.M., Mueller, L.A., and Tzafrir, I.
      Plant Physiology 131,  409-418
      Full text...
    • The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community 2003

      Rhee, S.Y., Beavis, W., Berardini, T.Z., Chen, G., Dixon, D., Doyle, A., Garcia-Hernandez, M., Huala, E., Lander, G., Montoya, M., Miller, N., Mueller, L.A., Mundodi, S., Reiser, L., Tacklind, J., Weems, D.C., Wu, Y., Xu, I., Yoo, D., Yoon, J., and Zhang, P.
      Nucleic Acids Research 31,  224-228
      Full text...
    • TAIR: a resource for integrated Arabidopsis data 2002

      Garcia-Hernandez, M., Berardini, T.Z., Chen, G., Crist, D., Doyle, A., Huala, E., Knee, E., Lambrecht, M., Miller, N., Mueller, L.A., Mundodi, S., Reiser, L., Rhee, S.Y., Scholl, R., Tacklind, J., Weems, D.C., Wu, Y., Xu, I., Yoo, D., Yoon, J., and Zhang, P.
      Funct. Integr. Genomic. 2,  239-253
      Full text...
    • StressDB: A locally installable web-based relational microarray database designed for small user communities 2002

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    • Nematode Signaling Molecules Derived from Multimodular Assembly of Primary Metabolic Building Blocks 2015

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    • Modular Assembly of Primary Metabolic Building Blocks: A Chemical Language in C. elegans 2015

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    • Transcriptome analysis of cAMP‐dependent protein kinase A regulated genes reveals the production of the novel natural compound fumipyrrole by Aspergillus fumigatus. 2015

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    • Comparative Metabolomics Reveals Endogenous Ligands of DAF-12, a Nuclear Hormone Receptor, Regulating C. elegans Development and LifespanCell Metab. 2014

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    • Endogenous NHR ligands: metabolomics to the rescue 2014

      Bethke, A., and Schroeder, F.C.
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    • Males Shorten the Life Span of C. elegans Hermaphrodites via Secreted Compounds 2014

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    • Natural variation in dauer pheromone production and sensing supports intraspecific competition in nematodes 2014

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    • Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus 2014

      Wiemann, P., Lechner, B.E., Baccile, J.A., Velk, T.A., Yin, W-B., Bok, J.W., Pakala, S., Losada, L., Nierman, W.C., Schroeder, F.C., and Keller, N.P.
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    • Small molecule signaling: encoding biological information in chemical structures. In Pristionchus pacificus - A nematode model for comparative and evolutionary biology 2014

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      Izrayelit, Y., Robinette, S.L., Bose, N., von Reuss, S.H. and Schroeder, F.C.
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      Bommarius, B., Anyanful, A., Izrayelit, Y., Bhatt, S., Cartwright, E., Wang, W., Swimm, A.I., Benian, G.M., Schroeder, F.C. and Kalman, D.
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    • Density dependence in Caenorhabditis larval starvation 2013

      Artyukhin, A.B., Schroeder, F.C. and Avery, L.
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    • Homologous NRPS-like gene clusters mediate redundant small-molecule biosynthesis in Aspergillus flavus 2013

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    • Structural Characterization of Amorfrutins Bound to the Peroxisome Proliferator-Activated Receptor gamma 2013

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      Artyukhin, A.B., Yim, J.J., Srinivasan, J., Izrayelit, Y., Bose, N., von Reuss, S.H., Jo, Y., Jordan, J.M., Baugh, L.R., Cheong, M., Sternberg, P.W., Avery, L. and Schroeder, F.C.
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    • Nematode-Trapping Fungi Eavesdrop on Nematode Pheromones 2013

      Hsueh, Y.P., Mahanti, P., Schroeder, F.C. and Sternberg, P.W.
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      Hutchinson, D.A., Savitzky, A.H., Burghardt, G.M., Nguyen, C., Meinwald, J., Schroeder, F.C. and Mori, A.
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    • Pheromone sensing regulates Caenorhabditis elegans lifespan and stress resistance via the deacetylase SIR-2.1 2013

      Ludewig, A.H., Izrayelit, Y., Park, D., Malik, R.U., Zimmermann, A., Mahanti, P., Fox, B.W., Bethke, A., Doering, F., Riddle, D.L. and Schroeder, F.C.
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      Ludewig, A.H. and Schroeder, F.C.
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      Meierhofer, D., Weidner, C., Hartmann, L., Mayr, J.A., Han, C.T., Schroeder, F.C. and Sauer, S.
      Mol. Cell. Proteomics 12,  1965-1979
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    • RsmA Regulates Aspergillus fumigatus Gliotoxin Cluster Metabolites Including Cyclo(L-Phe-L-Ser), a Potential New Diagnostic Marker for Invasive Aspergillosis 2013

      Sekonyela, R., Palmer, J.M., Bok, J.W., Jain, S., Berthier, E., Forseth, R., Schroeder, F. and Keller, N.P.
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      Stupp, G.S., von Reuss, S.H., Izrayelit, Y., Ajredini, R., Schroeder, F.C. and Edison, A.S.
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    • Amorfrutin B is an efficient natural peroxisome proliferator-activated receptor gamma (PPAR gamma) agonist with potent glucose-lowering properties 2013

      Weidner, C., Wowro, S.J., Freiwald, A., Kawamoto, K., Witzke, A., Kliem, M., Siems, K., Muller-Kuhrt, L., Schroeder, F.C. and Sauer, S.
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    • A Nonribosomal Peptide Synthetase-Derived Iron(III) Complex from the Pathogenic Fungus Aspergillus fumigates 2013

      Yin, W.B., Baccile, J.A., Bok, J.W., Chen, Y.M., Keller, N.P. and Schroeder, F.C.
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    • Complex small-molecule architectures regulate phenotypic plasticity in a nematode 2012

      Bose, N., Ogawa, A., von Reuss, S.H., Yim, J.J., Ragsdale, E.J., Sommer, R.J. and Schroeder, F.C.
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    • Ascaroside signaling is widely conserved among nematodes 2012

      Choe, A., von Reuss, S.H., Kogan, D., Gasser, R.B., Platzer, E.G., Schroeder, F.C. and Sternberg, P.W.
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    • Discovery of a novel pharmacological and structural class of gamma secretase modulators derived from the extract of Actaea racemosa 2012

      Findeis, M.A., Schroeder, F., McKee, T.D., Yager, D., Fraering, P.C., Creaser, S.P., Austin, W.F., Clardy, J., Wang, R., Selkoe, D. and Eckman, C.B.
      Acs. Chem. Neurosci. 3,  941-951
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    • Correlating secondary metabolite production with genetic changes using differential analysis of 2D NMR spectra 2012

      Forseth, R.R. and Schroeder, F.C.
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    • Chemical investigations of defensive steroid sequestration by the Asian snake Rhabdophis tigrinus 2012

      Hutchinson, D.A., Savitzky, A.H., Mori, A., Burghardt, G.M., Meinwald, J. and Schroeder, F.C.
      Chemoecology 22,  199-206
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    • Targeted metabolomics reveals a male pheromone and sex-specific ascaroside biosynthesis in Caenorhabditis elegans 2012

      Izrayelit, Y., Srinivasan, J., Campbell, S.L., Jo, Y., von Reuss, S.H., Genoff, M.C., Sternberg, P.W. and Schroeder, F.C.
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    • Interspecific nematode signals regulate dispersal behavior 2012

      Kaplan, F., Alborn, H.T., von Reuss, S.H., Ajredini, R., Ali, J.G., Akyazi, F., Stelinski, L.L., Edison, A.S., Schroeder, F.C. and Teal, P.E.
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    • Steroids as central regulators of organismal development and lifespan 2012

      Lee, S.S. and Schroeder, F.C.
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      Chose, A., Chuman, T., von Reuss, S.H., Dossey, A.T., Yim, J.J., Ajredini, R., Kolawa, A.A., Kaplan, F., Alborn, H.T., Teal, P.E.A., Schroeder, F.C., Sternberg, Arthur S., and Edison, P.W.
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      Li, B., Forseth, R.R., Bowers, A.A., Schroeder, F.C. and Walsh, C.T.
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    • Interaction of structure-specific and promiscuous G-protein-coupled receptors mediates small-molecule signaling in Caenorhabditis elegans 2012

      Park, D., O'Doherty, I., Somvanshi, R.K., Bethke, A., Schroeder, F.C., Kumar, U. and Riddle, D.L.
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      Robinette, S.L., Bruschweiler, R., Schroeder, F.C. and Edison, A.S.
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    • A modular library of small molecule signals regulates social behaviors in Caenorhabditis elegans 2012

      Srinivasan, J., von Reuss, S.H., Bose, N., Zaslaver, A., Mahanti, P., Ho, M.C., O'Doherty, O.G., Edison, A.S., Sternberg, P.W. and Schroeder, F.C.
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    • Comparative metabolomics reveals biogenesis of ascarosides, a modular library of small-molecule signals in C. elegans 2012

      von Reuss, S.H., Bose, N., Srinivasan, J., Yim, J.J., Judkins, J.C., Sternberg, P.W. and Schroeder, F.C.
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    • Amorfrutins are potent antidiabetic dietary natural products 2012

      Weidner, C., de Groot, J.C., Prasad, A., Freiwald, A., Quedenau, C., Kliem, M., Witzke, A., Kodelja, V., Han, C.T., Giegold, S., Baumann, M., Klebl, B., Siems, K., Muller-Kuhrt, L., Schurmann, A., Schuler, R., Pfeiffer, A.F.H., Schroeder, F.C., Bussow, K. and Sauer, S.
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    • Hierarchical alignment and full resolution pattern recognition of 2D NMR spectra: Application to nematode chemical ecology 2011

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    • Synthesis of caeliferins, elicitors of plant immune responses: accessing lipophilic natural products via cross metathesis 2011

      O'Doherty, I., Yim, J.J., Schmelz, E.A. and Schroeder, F.C.
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    • Ascaroside expression in Caenorhabditis elegans is strongly dependent on diet and developmental stage 2011

      Kaplan, F., Srinivasan, J., Mahanti, P., Ajredini, R., Durak, O., Nimalendran, R., Sternberg, P.W., Teal, P.E.A., Schroeder, F.C., Edison, A.S. and Alborn, H.T.
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    • Biosynthetic Chlorination of the Piperazate Residue in Kutzneride Biosynthesis by KthP 2011

      Jiang, W., Heemstra Jr., J.S., Forseth, R.R., Neumann, C.S., Manaviazar, S., Schroeder, F.C., Hale, K.J. and Walsh, C.T.
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    • NMR-spectroscopic analysis of mixtures: from structure to function 2011

      Forseth, R.R. and Schroeder, F.C.
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      Forseth, R.R., Fox, E.M., Chung, D., Howlett, B.J., Keller, N.P. and Schroeder, F.C.
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      Deyrup, S.T., Eckman, L.E., McCarthy, P.H., Smedley, S.R., Meinwald, J. and Schroeder, F.C.
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      Chung, K., Zhan, M., Srinivasan, J., Sternberg, P.W., Gong, E., Schroeder, F.C. and Lu, H.
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      Chavez, K.J., Feng, X., Flanders, J.A., Rodriguez, E. and Schroeder, F.C.
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    • Highly alpha-selective hydrolysis of alpha,beta-epoxyalcohols using tetrabutylammonium fluoride 2010

      Mukerjee, P., Abid, M. and Schroeder, F.C.
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    • Insect Natural Products 2010

      Gronquist , M. and Schroeder, F.C.
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    • Small Molecules and Analysis of Complex Mixtures 2010

      Edison, A.S. and Schroeder, F.C.
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      Full text...
    • A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans 2009

      Pungaliya, C., Srinivasan, J., Fox, B.W., Malik, R.U., Ludewig, A.H., Sternberg, P.W. and Schroeder, F.C.
      P. Natl. Acad. Sci. USA 106,  7708-7713
      Full text...
    • Odour-based species recognition in two sympatric species of sac-winged bats (Saccopteryx bilineata, S-leptura): combining chemical analyses, behavioural observations and odour preference tests 2009

      Caspers, B.A., Schroeder, F.C., Franke, S., Streich, W.J. and Voigt, C.C.
      Behav. Ecol. Sociobiol. 63,  741-749
      Full text...
    • A blend of small molecules regulates both mating and development in Caenorhabditis elegans 2008

      Srinivasan, J., Kaplan, F., Ajredini, R., Zachariah, C., Alborn, H.T., Teal, P.E.A., Malik, R.U., Edison, A.S., Sternberg, P.W. and Schroeder, F.C.
      Nature 454,  1115-1146
      Full text...
    • NMR-spectroscopic screening of spider venom reveals sulfated nucleosides as major components for the brown recluse and related species 2008

      Schroeder, F.C., Taggi, A.E., Gronquist, M., Malik, R.U., Grant, J.B., Eisner, T. and Meinwald, J.
      P. Natl. Acad. Sci. USA 105,  14283-14287
      Full text...
    • Identification of indole glucosinolate breakdown products with antifeedant effects on Myzus persicae (green peach aphid) 2008

      Kim, J.H., Lee, B.W., Schroeder, F.C. and Jander, G.
      Plant J. 54,  1015-1026
      Full text...
    • Maternal provisioning of sequestered defensive steroids by the Asian snake Rhabdophis tigrinus 2008

      Hutchinson, D.A., Savitzky, A.H., Mori, A., Meinwald, J. and Schroeder, F.C.
      Chemoecology 18,  181-190
      Full text...
    • Defensive chemistry of lycid beetles and of mimetic cerambycid beetles that feed on them 2008

      Eisner, T., Schroeder, F.C., Snyder, N., Grant, J.B., Aneshansley, D.J., Utterback, D., Meinwald, J. and Eisner, M.
      Chemoecology 18,  109-119
      Full text...
    • Biosynthesis of the thiamin-thiazole in eukaryotes: Identification of a thiazole tautomer intermediate 2008

      Chatterjee, A., Schroeder, F.C., Jurgenson, C.T., Ealick, S.E. and Begley, T.P.
      J. Am. Chem. Soc. 130,  11394-11398
      Full text...
    • Small-molecule pheromones that control dauer development in Caenorhabditis elegans 2007

      Butcher, R.A., Fujita, M., Schroeder, F.C., and Clardy, J .
      Nat. Chem. Biol. 3,  420-422
      Full text...
    • The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilis 2007

      Butcher, R.A., Schroeder, F.C., Fischbach, M.A., Walsh, C.T., and Clardy, J.
      P. Natl. Acad. Sci. USA 104,  1506-1509
      Full text...
    • Dietary sequestration of defensive steroids in nuchal glands of the Asian snake Rhabdophis tigrinus 2007

      Hutchinson, D., Mori, A., Savitzky, A., Burghardt, G., Wu, X., Meinwald, J., and Schroeder, F.C.
      P. Natl. Acad. Sci. USA 104,  2265-2270
      Full text...
    • Biosynthesis of thiamin thiazole in eukaryotes: Conversion of NAD to an advanced intermediate 2007

      Chatterjee, A., Jurgenson, C.T., Schroeder, F.C., Ealick S.E., and Begley, T.P.
      J. Am. Chem. Soc. 129,  2914-2922
      Full text...
    • Differential analysis of 2D NMR spectra: New natural products from a pilot-scale fungal extract library 2007

      Schroeder, F.C., Gibson, D.M., Churchill, A.C.L., Wursthorn, E.J., Krasnoff, S.B., and J. Clardy
      Angew. Chem. Int. Edit. 46,  901-904
      Full text...
    • Identification of Xanthurenic Acid 8-O-β-D-Glucoside and Xanthurenic Acid 8-O-Sulfate as Human Natriuretic Hormones 2007

      Cain, C.D., Schroeder, F.C., Shankel, S.W., Mitchnick, M., Schmertzler, M., and Bricker, N.S.
      P. Natl. Acad. Sci. USA 104,  17873-17878
      Full text...
    • Synthesis and Reactivity of [(silox)(2)Mo=NR](2)Hg (R = (t)Bu, (t)Amyl; silox = OSi(t)Bu(3)): Unusual Thermal Stability and Ready Nucleophilic Cleavage Rationalized by Electronic Factors 2007

      Rosenfeld, D.C., Wolczanski, P.T., Barakat, K.A., Buda, C., Cundari, T.R., Schroeder, F.C., Lobkovsky, E.B., and Inorg.
      Chem. 46,  9715-9735
      Full text...
    • An oligomerization approach to generating skeletal diversity 2006

      Spiegel, D.A., Schroeder, F.C., and Schreiber, S.L.
      J. Am. Chem. Soc. 128,  14766-14767
      Full text...
    • Extending the scope of NMR spectroscopy with microcoil probes 2006

      Schroeder, F.C., and Gronquist, M.
      Angew. Chem. Int. Edit. 45,  7122-7131
      Full text...
    • Thiamin biosynthesis in eukaryotes: Characterization of the enzyme-bound product of thiazole synthase from Saccharomyces cerevisiae and its implications in thiazole biosynthesis 2006

      Chatterjee, A., Jurgenson, C.T., Schroeder, F.C., Ealick, S.E., and Begley, T.P.
      J. Am. Chem. Soc. 128,  7158-7159
      Full text...
    • Small molecule signaling in Caenorhabditis elegans 2006

      Schroeder, F.C.
      ACS Chem. Biol. 1,  198-200
      Full text...
    • Phaeosphaeride A, An inhibitor of STAT3-dependent signaling isolated from an endophytic fungus 2006

      Maloney, K.N., Hao, W., Xu, J., Gibbons, J., Hucul, J., Roll, D., Brady, S.F., Schroeder, F.C., and Clardy, J.
      Org. Lett. 8,  4067-4070
      Full text...
    • Enzymatic generation of the antimetabolite γ,γ-dichloroaminobutyrate by NRPS and mononuclear iron halogenase action in a streptomycete 2006

      Ueki, M., Galonić, D.P., Vaillancourt, F.H., Garneau-Tsodikova, S., Yeh, E., Vosburg, D.A., Schroeder, F.C., Osada, H., and Walsh, C.T.
      Chem. Biol. 13,  1183-1191
      Full text...
    • Pinoresinol: a basic lignol of plant origin, appropriated for defensive purposes by a caterpillar 2006

      Schroeder, F.C, Grant, J.B., Weibel, D.B., Smedley, S.R., Bolton, K.L., Meinwald, J., and Eisner, T.
      P. Natl. Acad. Sci. USA 103,  15497-15501
      Full text...
    • Shunning the night to elude the hunter: diurnal fireflies and the “femmes fatales” 2006

      Gronquist, M., Schroeder, F.C., Ghiradella, H., Hill, D., McCoy, E.M., Meinwald, J., and Eisner, T.
      Chemoecology 16,  10810-10811
      Full text...
    • Exploring uncharted terrain in nature’s structure space using capillary NMR spectroscopy: 13 steroids from 50 fireflies 2005

      Gronquist, M, Meinwald, J., Eisner, T., and Schroeder, F.C.
      J. Am. Chem. Soc. 127,  10810-10811
      Full text...
    • The psammaplysenes, specific inhibitors of FOXO1a nuclear export 2005

      Schroeder, F.C., Kau, T.R., Silver, P.A., and Clardy, J.
      J. Nat. Prod. 68,  574-576
      Full text...
    • A new approach to natural products discovery exemplified by the identification of sulfated nucleosides in spider venom 2004

      Taggi, A.E., Meinwald, J., and Schroeder, F.C.
      J. Am. Chem. Soc. 126,  10364-10369
    • Chiral silylation reagents: Determining configuration via NMR-spectroscopic co-analysis 2004

      Schroeder, F.C., Weibel, D.B., and Meinwald, J.
      Org. Lett. 6,  3019-3022
      Full text...
    • Defensive ‘flocculent’ emissions in a Tiger moth, Homoeocera stictosoma (Arctiidae, Actiinae) 2003

      Yack, J. E., Conner, W.E., Timbers, T.A., Aiello, A., and Schroeder, F.C.
      J. Lepid. Soc. 58,  173-177
      Full text...
    • A chemical genetic screen identifies inhibitors of regulated nuclear export of a Forkhead transcription factor in PTEN-deficient tumor cells 2003

      Kau, T.R., Schroeder, F.C., Wojciechowski, C.L., Zhou, J.J., Roberts, T., Clardy, J., Sellers, W.R., and Silver, P.A.
      Cancer Cell 4,  463-476
      Full text...
    • Isobutylamides of unsaturated fatty acids from Chrysanthemum morifolium associated with host-plant resistance against the Western Flower Thrips 2003

      Tsao, R., Attygalle, A.B., Schroeder, F.C., Marvin, C.H., and McGarvey, B.D.
      J. Nat. Prod. 66,  1229-1231
      Full text...
    • New silyl ether reagents for the absolute stereochemical determination of secondary alcohols 2003

      Williamson, R.T., Barrios Sosa, A.C., Mitra, A., Seaton, P.J., Weibel, D.B., and Schroeder, F.C.
      Org. Lett. 5,  1745-1748
      Full text...
    • New non-glycosidic diterpenes from leaves of Stevia rebaudiana 2003

      McGarvey, B.D., Attygalle, A.B., Starratt, A.N., Brandle, J.E., Xiang, B., Schroeder, F.C., and Meinwald, J.
      J. Nat. Prod. 66,  1395-1398
      Full text...
    • Chemical defense and aposematism: the case of Utetheisa galapagensis 2003

      Roque-Albelo, L., Schroeder, F.C., Conner, W.E., Bezzerides, A., Hoebeke, E.R., Meinwald, J., and Eisner, T.
      Chemoecology 12,  153-157
      Full text...
    • Synthesis of Mayolene-16 and Mayolene-18: Larval defensive lipids from the European Cabbage Butterfly 2002

      Weibel, D.B., Shevy, L.E., Schroeder, F.C., and Meinwald, J.
      J. Org. Chem. 67,  5896-5900
      Full text...
    • Mayolenes: Labile defensive lipids from the glandular hairs of a caterpillar (Pieris rapae) 2002

      Smedley, S.R., Schroeder, F.C., Weibel, D.B., Meinwald, J., Lafleur, K.A., Renwick, J.A., Rutowski, R., and Eisner, T.
      P. Natl. Acad. Sci. USA 99,  6822-6827
      Full text...
    • Hydroquinone: a general phagostimulating pheromone in termites 2002

      Reinhard, J., Lacey, M.J., Ibarra, F., Schroeder, F.C., Kaib, M., and Lenz, M.
      J. Chem. Ecol. 28,  1-14
      Full text...
    • Synthesis of macrocyclic insect-derived alkaloids 2000

      Farmer, J.J., Schroeder, F.C., and Meinwald, J.
      Helv. Chim. Acta 83,  2594-2606
      Full text...
    • Production of a cyanogenic secretion by a thyridid caterpillar 2001

      Darling, D.C., Schroeder, F.C., Meinwald, J., Eisner, M., and Eisner, T.
      Naturwissenschaften 88,  306-309
      Full text...
    • Host recognition by the tobacco hornworm is mediated by a host plant compound 2001

      del Campo, M.L., Miles, C.I., Schroeder, F.C., Mueller, C., Booker, R., and Renwick, J.A.
      Nature 411,  186-189
      Full text...
    • Chemical defense: bestowal of a nuptial alkaloidal garment by a male moth upon its mate 2000

      Conner, W.E., Boada, R., Schroeder, F.C., Gonzales, A., Meinwald, J., and Eisner, T.
      P. Natl. Acad. Sci. USA 97,  14406-14411
      Full text...
    • A combinatorial library of macrocyclic polyamines produced by a ladybird beetle 2000

      Schroeder. F.C., Farmer, J.J., Attygalle, A.B., Smedley, S.R., Eisner, T., and Meinwald, J.
      J. Am. Chem. 122,  3628-3634
      Full text...
    • Chiral silylation reagents for the determination of absolute configuration by NMR spectroscopy 2000

      Weibel, D. B., Walker, T.R., Schroeder, F.C., and Meinwald, J.
      Org. Lett. 2,  2381-2383
      Full text...
    • Metabolic transformations of acquired lucibufagins by firefly “femmes fatales” 1999

      Gonzales, A., Schroeder, F.C., Attygalle, A.B., Svatos, A., Meinwald, J., and Eisner, T.
      Chemoecology 9,  105-112
      Full text...
    • Miriamin, a defensive diterpene from the eggs of a land slug (Arion sp.) 1999

      Schroeder, F.C., Gonzalez, A., Eisner, T., and Meinwald, J.
      P. Natl. Acad. Sci. USA 96,  13620-13525
      Full text...
    • N-Methylquinolinium 2-carboxylate, a defensive betaine from Photuris versicolor fireflies 1999

      Gonzalez, A., Schroeder, F.C., Eisner, T., and Meinwald, J.
      J. Nat. Prod. 62,  378-380
      Full text...
    • Synthesis of myrmicarin 217, a Pyrrolo[2,1,5-cd]indolizidine from ants 1998

      Schroeder, F.C.
      Tetrahedron 54,  5259-5264
      Full text...
    • Sex pheromone of female Vine Bud Moth, Theresimima ampellophaga, comprises (2S) butyl-(7Z)-tetradecenoate 1998

      Subchev, M., Harizanov, A., Francke, W., Franke, S., Plass, E., Reckziegel, A., and Schroeder, F.
      J. Chem. Ecol. 24,  1141-1152
      Full text...
    • Polyazamacrolides from ladybird beetles: Ring-size selective oligomerization 1998

      Schroeder, F.C., Smedley, S.R., Gibbons, L.K., Farmer, J.J., Attygalle, A.B., Eisner, T., and Meinwald, J.
      . Natl. Acad. Sci. USA 95,  13387-13391
      Full text...
    • Induced chemical defense in plants 1998

      Schroeder, F.C.
      Angew. Chem. Int. Edit. 37,  1213-1216
      Full text...
    • Psylloborine A, a new dimeric alkaloid from ladybird beetles 1998

      Schroeder, F.C., and Tolasch, T.
      Tetrahedron 54,  12243-12248
      Full text...
    • Absolute configuration of the polyazamacrolides, macrocyclic polyamines produced by a ladybird beetle 1998

      Schroeder, F.C., Farmer, J.J., Smedley, S.R., Eisner, T., and Meinwald, J.
      Tetrahedron Lett. 39,  6625-6628
      Full text...
    • Combinatorial chemistry in insects: A library of defensive macrocyclic polyamines 1998

      Schroeder, F.C., Farmer, J.J., Attygalle, A.B., Smedley, S.R., Eisner, T., and Meinwald, J.
      Science 281,  428-431
      Full text...
    • Cysteine-glutathione disulfide, the sperm-release pheromone of the marine polychaete Nereis succinea (Annelida: Polychaeta) 1998

      Zeeck, E., Müller, C.T., Beckmann, M., Hardege, J.D., Papke, U., Sinnwell, V., Schröder, F.C., and Francke, W.
      Chemoecology 8,  33-38
      Full text...
    • Mirasorvone: A Masked 20-Ketopregnane from the Defensive Secretion of a Diving Beetle (Thermonectus marmoratus) 1998

      Meinwald, J.,Huang, Q., Vrkoc, J., Herath, K.B., Yang, Z., Schröder, F.C., Attygal, A.B., Iyengar, V.K., Morgan, R.C., and Eisner, T.
      P. Natl. Acad. Sci. USA 95,  2733-2737
      Full text...
    • Myrmicarin 663: A New Decacyclic Alkaloid from Ants 1997

      Schröder, F.C., Sinnwell, V., Baumann, H., Kaib, M., and Francke, W
      Angew. Chem. Int. Edit. 36,  77-80
      Full text...
    • Synthesis of (1S,2R,5R)-2-Ethyl-1,5-dimethyl-6,8-dioxabicyclo[3.2.1]octane, the Aggregation Pheromone of Male Beech Bark Beetles Taphrorychus bicolor (Col., Scol.) 1996

      Francke, W., Schröder, F.C., Kohnle, U., and Simon, M.
      Liebigs Ann. 1523-1527
      Full text...
    • A New Family of Tricyclic Alkaloids from Myrmicaria Ants 1996

      Schröder, F.C., Franke, S., Francke, W., Baumann, H., Kaib, M., Pasteels, J.M., and Daloze, D.
      Tetrahedron 52,  13539-13546
      Full text...
    • 3,4-Epoxy-8-deoxycumambrin B, a Sesquiterpene Lactone from Tanacetum parthenium 1996

      Milbrodt, M., Schröder, F.C., and Wilfried, A.K.
      Phytochemistry 44,  471-474
      Full text...
    • Myrmicarin 430A: a New Heptacyclic Alkaloid from Myrmicaria Ants 1996

      Schröder, F.C., Baumann, H., Kaib, M., Sinnwell, V., and Francke, W.
      Chem. Commun. 18,  2139-2140
      Full text...
    • Identification and Synthesis of New Bicyclic Acetals from the Mountain Pine Beetle, Dendroctonus ponderosae Hopkins (Col.: Scol.) 1996

      Francke, W., Schröder, F.C., Philipp, P., Meyer, H., Sinnwell, V., and Gries, G.
      Bioorgan. Med. Chem. 4,  363-374
      Full text...
    • Semiochemicals in Bark Beetles: New Results, Remarks and Reflections 1995

      Francke, W., Bartels, J., Meyer, H., Schröder, F.C., Kohnle, U., Baader, E., and Vite, J.P.
      J. Chem. Ecol. 21,  1043-1063
      Full text...
    • The Male Pheromone of the Old House Borer Hylotrupes bajulus (L.) (Coleoptera: Cerambycidae): Identification and Response 1995

      Fettköther, R., Dettner, K., Schröder, F.C., Meyer, H., Francke, W., and Noldt, U.
      Experientia 51,  270-277
      Full text...
    • New Alkaloids from Ants: Identification and Synthesis of (3R,5S,9R)-3-Butyl-5-(1-oxopropyl)-indolizidine and (3R,5R,9R)-3-Butyl-5-(1-oxopropyl)indolizidine, Constituents of the Poison Gland Secretion in Myrmicaria eumenoides (Hymenoptera, Formicidae) 1995

      Francke, W., Schröder, F.C., Walter, F., Sinnwell, V., Baumann, H., and Kaib, M.
      Liebigs Ann. Chem. 6,  965-977
      Full text...
    • Synthesis of (3R)-3-Hydroxy-2-hexanone, (2R,3R)-2,3-Hexanediol and (2S,3R)-2,3-Hexanediol, the Male Sex Pheromone of Hylotrupes bajulusand Pyrrhidium sanguineum (Cerambycidae) 1994

      Schröder, F.C., Fettköther, R., Noldt, U., König, W.A., and Francke, W.
      Liebigs Ann. Chem. 12,  1211-1218
      Full text...
    • Arabidopsis Chloroplast Mini-Ribonuclease III Participates in rRNA Maturation and Intron Recycling 2015

      Hotto, A.M., Castandet, B., Gilet, L., Higdon, A., Condon, C., and Stern, D.B.
      The Plant Cell tpc.114.134452
      Full text...
    • A protein with an inactive pterin-4a-carbinolamine dehydratase domain is required for Rubisco biogenesis in plants 2014

      Feiz, L., Williams-Carrier, R., Belcher, S., Montano, M., Barkan, A, and Stern, D.B.
      Plant Journal 80,  862-869
      Full text...
    • RNA processing and decay in plastids 2013

      Germain, A., Hotto, A.M., Barkan, A., and Stern, D.B.
      Wiley Interdisciplinary Reviews: RNA 4,  295-316
      Full text...
    • RNase J participates in a pentatricopeptide repeat protein-mediated 5′ end maturation of chloroplast mRNAs. 2013

      Luro, S., Germain, A., Sharwood, R.E., and Stern, D.B.
      Nucleic Acids Research 41,  9141-9151
      Full text...
    • A molecular contribution to the assessment of the Tricholoma equestre species complex 2013

      Moukha, S., Ferandon, C., Beroard, E., Guinberteau, J., Castandet, B., Callac, P., Creppy, E., and Barroso, G.
      Fungal Biology 117,  145-155
      Full text...
    • Arabidopsis chloroplast quantitative editotype 2013

      Ruwe, H., Castandet, B., Schmitz-Linneweber, C., and Stern, D.B.
      FEBS Lett. 587,  1429-1433
      Full text...
    • The Plant Science Decadal Vision: Response to the Martin Commentary 2013

      Stern, D., and MacKenzie, S.
      Plant Cell 25,  4775-4776
      Full text...
    • Ribulose-1,5-bis-phosphate carboxylase/oxygenase accumulation factor1 is required for holoenzyme assembly in maize 2012

      Feiz, L., Williams-Carrier, R., Wostrikoff, K., Belcher, S., Barkan, A., and Stern, D.B.
      Plant Cell 24,  3435-3446
      Full text...
    • Ribonuclease II preserves chloroplast RNA homeostasis by increasing mRNA decay rates, and cooperates with polynucleotide phosphorylase in 3′ end maturation 2012

      Germain, A., Kim, S.H., Gutierrez, R., and Stern, D.B.
      Plant J. 72,  960-971
      Full text...
    • Plastid non-coding RNAs: emerging candidates for gene regulation 2012

      Hotto , A.M., Germain, A., and Stern, D.B.
      Trends Plant Sci. 17,  737-744
      Full text...
    • Ectopic expression of Rubisco subunits in maize mesophyll cells does not overcome barriers to cell type-specific accumulation. 2012

      Wostrikoff, K., Clark, A., Sato, S., Clemente, T., and Stern, D.
      Plant Physiology 160,  419-432
      Full text...
    • Overaccumulation of the chloroplast antisense RNA AS5 is correlated with decreased abundance of 5S rRNA in vivo and inefficient 5S rRNA maturation in vitro. 2011

      Sharwood, R.E., Hotto, A.M., Bollenbach, T.J., and Stern, D.B.
      RNA 17,  230-243
      Full text...
    • Chloroplast RNase J compensates for inefficient transcription termination by removal of antisense RNA 2011

      Sharwood, R.E., Halpert, M., Luro, S., Schuster, G., and Stern, D.B.
      RNA 17,  2165-2176
      Full text...
    • Unexpected diversity of chloroplast noncoding RNAs as revealed by deep sequencing of the Arabidopsis transcriptome G3 2011

      Hotto, A.M., Schmitz, R.J., Fei, Z., Ecker, J.E., and Stern, D.B.
      G3 (Bethesda) 1(7),  559–570
      Full text...
    • Mutational analysis of Arabidopsis chloroplast polynucleotide phosphorylase reveals roles for both RNase PH core domains in polyadenylation, RNA 3′-end maturation and intron degradation 2011

      Germain, A., Herlich, S., Larom, S., Kim, S.H., Schuster, G., and Stern, D.B.
      Plant J. 67,  381-394
      Full text...
    • Differential replication of two chloroplast genome forms in heteroplasmic Chlamydomonas reinhardtii gametes contributes to alternative inheritance patterns. 2010

      Nishimura, Y., and Stern, D.B.
      Genetics 185,  1167-1181
      Full text...
    • MRL1, a Conserved Pentatricopeptide Repeat Protein, Is Required for Stabilization of rbcL mRNA in Chlamydomonas and Arabidopsis 2010

      Johnson, X., Wostrikoff, K., Finazzi, G., Kuras, R., Schwarz, C., Bujaldon, S., Nickelsen, J., Stern, D.B., Wollman, F.A., and Vallon, O.
      Plant Cell 22,  234-248
      Full text...
    • Overexpression of a natural chloroplast-encoded antisense RNA in tobacco destabilizes 5S rRNA and retards plant growth 2010

      Hotto, A.M., Huston, Z.E., and Stern, D.B.
      , 10, 213. 10,  213
      Full text...
    • Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae) 2010

      Alverson, A.J., Wei, X.X., Rice, D.W., Stern, D.B., Barry, K., and Palmer, J.D.
      Molecular Biology and Evolution 27,  1436-1448
      Full text...
    • Transgenic maize lines with cell-type specific expression of fluorescent proteins in plastids 2010

      Sattarzadeh, A., Fuller, J., Moguel, S., Wostrikoff, K., Sato, S., Covshoff, S., Clemente, T., Hanson, M., and Stern, D.B.
      Plant Biotechnology Journal 8,  112-125
      Full text...
    • Developmental and cell type characterization of bundle sheath and mesophyll chloroplast transcript abundance in maize 2010

      Sharpe, R.M., Mahajan, A., Takacs, E.M., Stern, D.B,. and Cahoon, A.B.
      Curr. Genet. 57(2),  89-102
      Full text...
    • Chloroplast RNA metabolism 2010

      Stern, D.B., Goldschmidt-Clermont, M., and Hanson, M.R.
      Annu. Rev. Plant Biol. 61,  125-155
      Full text...
    • Use of Illumina sequencing to identify transposon insertions underlying mutant phenotypes in high-copy Mutator lines of maize 2010

      Williams-Carrier, R., Stiffler, N., Belcher, S., Kroeger, T., Stern, D.B., Monde, R.A., Coalter, R., and Barkan, A.
      Plant J. 6,  167-177
      Full text...
    • The RNA-binding proteins CSP41a and CSP41b may regulate transcription and translation of chloroplast-encoded RNAs in Arabidopsis 2009

      Bollenbach, T.J., Sharwood, R.E., Gutierrez, R., Lerbs-Mache, S., and Stern, D.B.
      Plant Molecular Biology 69,  541-552
      Full text...
    • Mating and tetrad separation of Chlamydomonas reinhardtii for genetic analysis 2009

      Jiang, X., and Stern, D.
      J. Vis. Exp. 30,  1274
      Full text...
    • Mitochondria and Chloroplasts 2009

      Newton, K.J., Stern, D.B., and Gabay-Laughnan, S.
      In Handbook of Maize (Bennetzen, J.L. and Hake, S.C. eds),  0: Springer
      Full text...
    • Abnormal physiological and molecular mutant phenotypes link chloroplast polynucleotide phosphorylase to the phosphorus deprivation response in Arabidopsis 2009

      Marchive, C., Yehudai-Resheff, S., Germain, A., Fei, Z.J., Jiang, X.S., Judkins, J., Wu, H., Fernie, A.R., Fait, A., and Stern, D.B.
      Plant Physiology 151,  905-924
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    • Insect-machine interface based neurocybernetics 2009

      Bozkurt, A., Gilmour, R.F., Sinha, A., Stern, D., and Lal, A.
      IEEE T. Bio-Med. Eng. 56,  1727-1733
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    • RNA polyadenylation and decay in mitochondria and chloroplasts 2009

      Schuster, G., and Stern, D.
      Prog. Mol. Biol. Transl. 85,  393-422
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    • Polyadenylation in Arabidopsis and Chlamydomonas organelles: the input of nucleotidyltransferases, poly(A) polymerases and polynucleotide phosphorylase 2009

      Zimmer, S.L., Schein, A., Zipor, G., Stern, D.B., and Schuster, G.
      Plant J. 59,  88-99
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    • Organellar and metabolic processes 2008

      Stern, D.B.
      In The Chlamydomonas Sourcebook (Stern, D.B. ed.),  Oxford 0: Elsevier
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    • Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient 2008

      Cahoon, A.B., Takacs, E.M., Sharpe, R.M., and Stern, D.B.
      Plant Mol. Biol. 66,  33-46
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    • Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features 2008

      Zimmer, S.L., Fei, Z.J., and Stern, D.B.
      Genetics 179,  125-136
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    • Integration of chloroplast nucleic acid metabolism into the phosphate deprivation response in Chlamydomonas reinhardtii 2007

      Yehudai-Resheff, S., Zimmer, S.L., Komine, Y., Stern, D.B.
      Plant Cell 19,  1023-1038
      Full text...
    • Rubisco large subunit translation is autoregulated in response to its assembly state in tobacco chloroplasts 2007

      Wostrikoff, K., and Stern, D.B.
      P. Natl. Acad. Sci. U S A 104,  6466-6471
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    • The evolution of key animal and plant functions is revealed by analysis of the Chlamydomonas genome. 2007

      Merchant, S. S., Prochnik, S. E., Vallon, O., Harris, E. H., Karpowicz, S. J., Witman, G. B., … Maréchal-Drouard, L.
      Science 318,  245-250
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    • Nuclear Suppressors Define Three Factors that Participate in Both 5’ and 3’ End Processing of mRNAs in Chlamydomonas chloroplasts 2006

      Rymarquis, L.A., Higgs, D.C., and Stern, D.B.
      Plant J. 46,  448-461
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    • Adaptive Evolution of Chloroplast Genome Structure Inferred Using a Parametric Bootstrap Approach 2006

      Cui, L., Leebens-Mack, J., Wang, L.S., Tang, J., Rymarquis, L., Stern, D.B., and dePamphilis, C.W.
      BMC Evol. Biol. 6,  13
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    • Chlamydomonas reinhardtii Encodes a Single sigma70-like Factor Which Likely Functions in Chloroplast Transcription 2006

      Bohne, A.V., Ihrimovitch, V., Weihe, A., and Stern, D.B.
      Curr. Genet. 49,  333-340
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    • The sulfur acclimation SAC3 kinase is required for chloroplast transcriptional repression under sulfur limitation inChlamydomonas reinhardtii 2006

      Irihimovitch, V., and Stern, D.B.
      P. Natl. Acad. Sci. U S A 103,  7911-7916
      Full text...
    • Beyond Complementation: Map-Based Cloning in Chlamydomonas reinhardtii 2005

      Rymarquis, L.A., Handley, J.M., Thomas, M., and Stern, D.B.
      Plant Physiology 137,  557-566
      Full text...
    • A Spontaneous tRNA Suppressor of a Mutation in the Chlamydomonas reinhardtii Nuclear MCD1 Gene Required for Stability of the Chloroplast petD mRNA 2005

      Murakami, S., Kuehnle, K., and Stern, D.B.
      Nucleic Acids Research 33,  3372-3380
      Full text...
    • Microarray Analysis Confirms the Specificity of a Chlamydomonas reinhardtii Chloroplast RNA Stability Mutant 2005

      Erickson, B., Stern, D.B., and Higgs, D.C
      Plant Physiology 137,  534-544
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    • A Proposed Mechanism for the Inhibitory Effects of Oxidative Stress on Rubisco Assembly and Its Subunit Expression 2005

      Cohen, I., Knopf, J.A., Irihimovitch, V., and Shapira, M.
      Plant Physiology 137,  738-746
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    • RNR1, a 3’-5’ Exoribonuclease Belonging to the RNR Superfamily, Catalyzes 3’ Maturation of Chloroplast Ribosomal RNAs in Arabidopsis thaliana 2005

      Bollenbach, T.J., Lange, H., Gutierrez, R., Stern, D.B., and Gagliardi, D.
      Nucleic Acids Research 33,  2751-2763
      Full text...
    • Genetics and Genomics of Chloroplast Biogenesis: Maize as a Model System 2004

      Stern, D.B., Hanson, M.R., and Barkan, A.
      Trends in Plant Science 9,  293-301
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    • Antisense Transcript and RNA Processing Alterations Suppress Instability of Polyadenylated mRNA in Chlamydomonas chloroplasts 2004

      Nishimura, Y., Kikis, E.A., Zimmer, S.L., Komine, Y., and Stern, D.B.
      Plant Cell 16,  2849-2869
      Full text...
    • Development of an in vitro propagation method for the classified New York State-threatened native species Agrimonia rostellata 2015

      Van Eck, J., Keen, P., and Nuzzo, V.
      Native Plants J 16,  227-233
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    • A cascade of arabinosyltransferases controls shoot meristem size in tomato 2015

      Xu, C., Liberatore, K.L., MacAlister, C.A., Huang, Z., Chu, Y.H., Jiang, K., Brooks, C., Ogawa-Ohnishi, M., Xiong, G., Pauly, M., Van Eck, .J, Matsubayashi, Y., van der Knaap, E., Lippman, Z.B.
      Nat Genets 47,  784-792
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    • Efficient gene editing in tomato in the first Generation using the clustered regularly interspaced short palindromic repeats/CRISPR-associated9 system. 2014

      Brooks, C., Nekrasov, V., Lippman, Z.B., and Van Eck, J.
      Plant Physiology 166,  1292-1297
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    • A snapshot of the emerging tomato genome sequence 2009

      The Tomato Genome Consortium.
      The Plant Genome 2,  78-92
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    • The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL) 2005

      Mueller, L. A., Tanksley, S.D., Giovannoni, J., Van Eck, J., Stack, S., Choi, D., Kim, B.D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop, G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N.K., Stiekema, W., Lindhout, P., Jesse, T., Lankhorst, R.K., Bouzayen, M., Shibata, D., Tabata, S., Granell, A., Botella, M.A., Giuliano, G., Frusciante, L., Causse, M., and Zamir, D.
      Comparative and Functional Genomics 6,  153-158
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    • Genetic Control and Comparative Genomic Analysis of Flowering Time in Setaria (Poaceae) 2013

      Mauro-Herrera, M., Wang, X., Barbier, H., Brutnell, T.P., Devos, K.M., and Doust, A.N.
      G3 (Bethesda) 3(2),  283–295
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    • actors influencing plant regeneration from seedling explants of Hairy nightshade (Solanum sarrachoides) 2012

      Ju, H.J., Van Eck, J., and Gray, S.M.
      Plant Cell, Tissue and Organ Culture 108,  121-128
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    • The Or gene enhances carotenoid accumulation and stability during post-harvest storage of potato tubers 2012

      Li, L., Yang, Y., Xu, Q., Owsiany, K., Welsch, R., Chitchumroonchokchai, C., Lu, S., Van Eck, J., Deng, X.X., Failla, M., and Thannhauser, T.W.
      Molecular Plant 5,  339-352
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    • Engineering virus resistance using a modified potato gene 2011

      Cavatorta, J., Perez, K.W., Gray, S.M., Van Eck, J., Yeam, I., and Jahn, M.
      Plant Biotechnol. J. 9,  1014-1021
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    • Setaria viridis: a model for C4 photosynthesis 2010

      Brutnell, T.P., Wang, L., Swartwood, K., Goldschmidt, A., Jackson, D., Zhu, X.G., Kellogg, E., and Van Eck, J.
      Plant Cell 22,  2537-2544
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    • Modulation of carotenoid accumulation in transgenic potato by inducing chromoplast formation with enhanced sink strength 2010

      Van Eck, J., Zhou, X., Lu, S., and Li, L.
      Methods Mol. Biol. 643,  77-93
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    • Continued expression of plant-made vaccines following long-term cryopreservation of antigen-expressing tobacco cell cultures 2009

      Van Eck, J., and Keen, P.
      Vitro Cell. Dev-Pl. 45,  750-757
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    • Effect of the cauliflower Or transgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers 2008

      Lopez, A.B., Van Eck, J., Conlin, B.J., Paolillo, D.J., O'Neill , J., and Li, L.
      J. Exp. Bot. 59,  213-223
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    • Use of the cauliflower Or gene for improving crop nutritional quality 2008

      Zhou, X., Van Eck, J., and Li, L.
      Biotechnology Annual Review 14,  171-190
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    • Tomato 2007

      Labate, A., Grandillo, S., Fulton, T., Muños, S., Caicedo, A.L., Peralta, I., Ji, Y., Chetelat, R.T., Scott, J.W., Gonzalo, M.J., Francis, D., Yang, W., van der Knaap, E., Baldo, A.M., Smith-White, B., Mueller, L.A., Prince, J.P., Blanchard, N.E., Storey, D.B., Stevens, M.R., Robbins, M.D., Wang, J.-F., Liedl, B.E., O’Connell, M.A., Stommel, J.R., Aoki, K., Iijima, Y., Slade, A.J., Hurst, S.R., Loeffler, D., Steine, M.N., Vafeados, D., McGuire, C., Freeman, C., Amen, A., Goodstal, J., Facciotti, D., VanEck, J., and Causs, M.
      Genome Mapping and Molecular Breeding in Plants 5,Vegetables. (C Kole ed.), Springer-Verlag, Berlin Heidelberg New York,  pp 1: 131
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    • Tomato Transformation: Nuclear and Chloroplast Genomes 2004

      Van Eck, J., Walmsey, A.M., and Daneill, H.
      Transgenic Crops of the World: Essential Protocols 405-423
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    • Organogenesis from Transformed Tomato Explants 2004

      Frary, A., and Van Eck, J.
      Transgenic Plants: Methods and Protocols 286,  141-150
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    • Metabolomics of plant saponins: Bioprospecting triterpene glycoside diversity with respect to mammalian cell targets 2002

      Joshi, L., Van Eck, J.M., Mayo, K., Di Silvestro, R., Blake (Nieto), M.E., Ganapathi, T., Haridas, V., Gutterman, J.U., and Arntzen, C.J.
      OMICS: A Journal of Integrative Biology 6,  235-246
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    • A new class of regulatory genes underlying the cause of pear-shaped tomato fruit 2002

      Liu, J., Van Eck, J., Cong, B., and Tanksley, S.D.
      P. Natl. Acad. Sci. U S A 99,  13302-13306
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    • Transgenic Gladiolus 2001

      Kamo, K., Roh, M., Blowers, A., Smith, F., and Van Eck, J.
      P. S. Bajaj (ed.). Biotechnology in Agriculture and Forestry 48,  155-170
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    • Agrobacterium-mediated transformation of embryogenic cell suspensions of the banana cultivar Rasthali (AAB) 2001

      Ganapathi, T.R., Higgs, N.S., Balint-Kurti, P.J., Arntzen, C.J., May, G.D., and Van Eck, J.
      Plant Cell Reports 20,  157-162
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