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BTI Server Software

The following software is installed on the Boyce and William servers at Boyce Thompson Institute:

  • BLAST
  • blat
  • tophat2
  • bowtie2
  • cufflinks
  • bedtools
  • samtools
  • bwa
  • sra-toolkit
  • fastq-mcf
  • fastqc
  • DESeq and edgeR
  • htseq-count
  • mummer
  • Trinity
  • SOAP de novo
  • jellyfish
  • gmap
  • abyss
  • freebayes
  • musket
  • paup
  • prinseq
  • RepeatMasker
  • sga
  • vcfutils

Contact Suzy Strickler if you need other software installed.